mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,178,500 | 0 | C | T | 72.6% | 185.4 / 86.2 | 106 | R1075C (CGT→TGT) | rpoC | RNA polymerase, beta prime subunit |
| * | CP009273 | 4,149,103 | 0 | A | C | 65.4% | 73.5 / 83.7 | 80 | N229T (AAC→ACC) | oxyR | oxidative and nitrosative stress transcriptional regulator |
| * | CP009273 | 2,170,734 | 0 | G | T | 36.6% | 52.7 / 31.4 | 82 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 576,215 | 0 | G | C | 33.3% | 77.8 / 10.9 | 47 | intergenic (‑314/‑75) | ylcI/nohD | DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein |
| * | CP009273 | 2,998,305 | 0 | G | T | 29.3% | 84.7 / 11.1 | 58 | Q281K (CAA→AAA) | ygeV | putative sigma‑54‑interacting transcriptional activator |
| * | CP009273 | 104,041 | 0 | G | T | 24.6% | 110.7 / 14.2 | 61 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 104,042 | 0 | A | T | 24.6% | 136.9 / 15.6 | 59 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1101798 = | 69 (0.860) | 3 (0.040) | 3/260 | 6.0 | 3.7% | coding (523/534 nt) | ymdB | O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| ? | CP009273 | = 1594021 | 87 (1.110) | coding (446/1593 nt) | lsrK | autoinducer‑2 (AI‑2) kinase | |||||
| * | ? | CP009273 | = 2298234 | NA (NA) | 5 (0.060) | 3/264 | 6.1 | 5.4% | noncoding (339/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 2298242 = | 88 (1.090) | noncoding (347/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | CP009273 | = 847020 | 66 (0.820) | 3 (0.040) | 3/264 | 6.1 | 4.5% | coding (1034/1584 nt) | ybiP | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
| ? | CP009273 | = 847147 | 63 (0.790) | coding (907/1584 nt) | ybiP | putative EptAB family phosphoethanolamine transferase, inner membrane protein | |||||