mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 97 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4625570 = | 86 (1.020) | 3 (0.040) | 3/238 | NT | 3.7% | coding (233/474 nt) | creA | putative periplasmic protein |
| ? | CP009273 | 4625599 = | 74 (0.920) | coding (262/474 nt) | creA | putative periplasmic protein | |||||
| * | ? | CP009273 | = 4588078 | 77 (0.920) | 3 (0.040) | 3/240 | NT | 3.8% | coding (1181/2292 nt) | opgB | phosphoglycerol transferases I and II |
| ? | CP009273 | = 4588108 | 77 (0.950) | coding (1151/2292 nt) | opgB | phosphoglycerol transferases I and II | |||||
| * | ? | CP009273 | 4480009 = | 69 (0.820) | 3 (0.040) | 3/240 | NT | 4.4% | coding (948/999 nt) | idnR | transcriptional repressor, 5‑gluconate‑binding |
| ? | CP009273 | 4480043 = | 64 (0.790) | coding (914/999 nt) | idnR | transcriptional repressor, 5‑gluconate‑binding | |||||
| * | ? | CP009273 | = 4463882 | 67 (0.800) | 3 (0.040) | 3/242 | NT | 4.1% | intergenic (‑12/‑59) | bdcA/bdcR | c‑di‑GMP‑binding biofilm dispersal mediator protein/transcriptional repressor for divergent bdcA |
| ? | CP009273 | = 4463955 | 76 (0.930) | coding (15/594 nt) | bdcR | transcriptional repressor for divergent bdcA | |||||
| * | ? | CP009273 | = 4401627 | 97 (1.160) | 3 (0.040) | 3/238 | NT | 3.4% | coding (509/660 nt) | yjfK | DUF2491 family protein |
| ? | CP009273 | = 4401677 | 80 (0.990) | coding (559/660 nt) | yjfK | DUF2491 family protein | |||||
| * | ? | CP009273 | 4350343 = | 94 (1.120) | 4 (0.050) | 4/246 | NT | 4.1% | coding (1409/1539 nt) | cadC | cadBA operon transcriptional activator |
| ? | CP009273 | 4350391 = | 96 (1.150) | coding (1361/1539 nt) | cadC | cadBA operon transcriptional activator | |||||
| * | ? | CP009273 | = 4312573 | 106 (1.260) | 4 (0.050) | 4/236 | NT | 3.8% | pseudogene (59/372 nt) | phnE | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily |
| ? | CP009273 | = 4312600 | 100 (1.250) | pseudogene (32/372 nt) | phnE | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily | |||||
| * | ? | CP009273 | = 4297678 | 63 (0.750) | 3 (0.040) | 3/236 | NT | 4.2% | coding (618/696 nt) | alsE | allulose‑6‑phosphate 3‑epimerase |
| ? | CP009273 | = 4297712 | 78 (0.980) | coding (584/696 nt) | alsE | allulose‑6‑phosphate 3‑epimerase | |||||
| * | ? | CP009273 | 4274318 = | 98 (1.170) | 4 (0.050) | 4/234 | NT | 4.3% | coding (513/1650 nt) | actP | acetate transporter |
| ? | CP009273 | 4274353 = | 84 (1.060) | coding (478/1650 nt) | actP | acetate transporter | |||||
| * | ? | CP009273 | = 4221206 | 108 (1.290) | 3 (0.040) | 3/234 | NT | 2.7% | intergenic (+52/+81) | rluF/yjbD | 23S rRNA pseudouridine(2604) synthase/DUF3811 family protein |
| ? | CP009273 | = 4221231 | 114 (1.440) | intergenic (+77/+56) | rluF/yjbD | 23S rRNA pseudouridine(2604) synthase/DUF3811 family protein | |||||