mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 33.8% | 127.1 / 57.7 | 151 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 4,402,598 | 0 | C | G | 24.1% | 221.7 / 11.4 | 84 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 68,486 | 0 | T | G | 23.6% | 234.6 / 16.3 | 110 | L217V (TTG→GTG) | yabI | DedA family inner membrane protein |
| * | CP009273 | 2,170,702 | 0 | G | T | 21.3% | 180.6 / 10.6 | 122 | intergenic (‑19/+289) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 1,828,727 | 0 | G | C | 21.2% | 213.0 / 13.1 | 87 | E119Q (GAA→CAA) | ydjY | putative ferrodoxin‑like lipoprotein |
| * | CP009273 | 3,232,982 | 0 | C | G | 20.4% | 139.3 / 12.7 | 49 | intergenic (+78/‑321) | alx/sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360286 | NA (NA) | 4 (0.030) +AATTC |
3/258 | 8.9 | 3.3% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 122 (0.990) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | 1871885 = | 87 (0.710) | 3 (0.020) | 3/262 | 9.0 | 3.1% | intergenic (‑96/‑87) | yoaF/yeaP | DUF333 family outer membrane lipoprotein/diguanylate cyclase |
| ? | CP009273 | 3950316 = | 100 (0.830) | coding (865/894 nt) | ilvY | transcriptional activator of ilvC; autorepressor | |||||
| * | ? | CP009273 | 345595 = | 196 (1.590) | 3 (0.020) | 3/264 | 9.0 | 1.9% | noncoding (280/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | CP009273 | 4512946 = | 123 (1.010) | coding (966/1968 nt) | yjhG | putative dehydratase | |||||
| * | ? | CP009273 | 2776733 = | 85 (0.690) | 3 (0.020) | 3/268 | 9.1 | 3.4% | intergenic (‑70/+264) | pinH/ypjC | pseudogene, invertase resolvase family/pseudogene |
| ? | CP009273 | = 2990483 | NA (NA) | noncoding (568/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | = 1588755 | 114 (0.930) | 3 (0.020) | 3/268 | 9.1 | 2.6% | pseudogene (3490/5323 nt) | yneO | pseudogene, AidA homolog |
| ? | CP009273 | 1588762 = | 112 (0.910) | pseudogene (3483/5323 nt) | yneO | pseudogene, AidA homolog | |||||
| * | ? | CP009273 | = 1529618 | 88 (0.710) | 3 (0.020) | 3/268 | 9.1 | 3.4% | coding (498/894 nt) | yddE | PhzC‑PhzF family protein |
| ? | CP009273 | 1529626 = | 84 (0.680) | coding (490/894 nt) | yddE | PhzC‑PhzF family protein | |||||
| * | ? | CP009273 | = 620676 | 124 (1.010) | 3 (0.020) | 3/266 | 9.1 | 2.4% | coding (336/1176 nt) | entC | isochorismate synthase 1 |
| ? | CP009273 | 620682 = | 121 (0.990) | coding (342/1176 nt) | entC | isochorismate synthase 1 | |||||