mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,402,598 | 0 | C | G | 31.0% | 110.3 / 13.3 | 59 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 2,178,908 | 0 | T | G | 22.6% | 110.9 / 15.3 | 53 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 3,857,132 | 0 | A | C | 21.3% | 119.6 / 32.6 | 61 | intergenic (‑169/‑127) | glvC/yidP | pseudogene, arbutin specific enzyme IIC component of PTS;enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system, arbutin‑like IIB component; PTS system, arbutin‑like IIC component/UTRA domain‑containing GntR family putative transcriptional regulator |
| * | CP009273 | 1,160,027 | 0 | A | C | 20.4% | 85.2 / 10.6 | 44 | K159N (AAA→AAC) | nagZ | beta N‑acetyl‑glucosaminidase |
| Marginal new junction evidence (lowest skew 10 of 215 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 311160 = | NA (NA) | 47 (0.550) | 30/262 | 3.1 | NA | coding (159/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | 311214 = | NA (NA) | coding (213/300 nt) | insE1 | IS3 transposase A | |||||
| * | ? | CP009273 | 2721617 = | NA (NA) | 37 (0.440) | 26/256 | 3.6 | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 3297843 | NA (NA) | 28 (0.350) | 21/248 | 4.4 | NA | intergenic (+29/+89) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity |
| ? | CP009273 | = 3297912 | NA (NA) | intergenic (+98/+20) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity | |||||
| * | ? | CP009273 | 270385 = | NA (NA) | 26 (0.310) | 21/254 | 4.6 | NA | noncoding (180/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270482 = | NA (NA) | noncoding (277/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 220861 | NA (NA) | 25 (0.300) | 20/256 | 4.8 | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 220890 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 4198063 | 26 (0.300) | 27 (0.320) | 20/260 | 4.9 | 51.9% | intergenic (‑603/‑12) | purH/rrsE | fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon |
| ? | CP009273 | = 4198095 | NA (NA) | noncoding (21/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | = 3935156 | 5 (0.060) | 27 (0.320) | 20/260 | 4.9 | 84.9% | intergenic (‑469/‑12) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 3935188 | NA (NA) | noncoding (21/1542 nt) | rrsC | 16S ribosomal RNA of rrnC operon | |||||
| * | ? | CP009273 | 3422101 = | NA (NA) | 27 (0.320) | 20/260 | 4.9 | 90.3% | noncoding (21/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| ? | CP009273 | 3422133 = | 3 (0.030) | intergenic (‑12/‑462) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein | |||||
| * | ? | CP009273 | 2724491 = | NA (NA) | 27 (0.320) | 20/260 | 4.9 | NA | noncoding (26/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2724533 = | NA (NA) | intergenic (‑17/+426) | rrsG/clpB | 16S ribosomal RNA of rrnG operon/protein disaggregation chaperone | |||||
| * | ? | CP009273 | 377428 = | NA (NA) | 22 (0.260) | 19/260 | 5.2 | NA | coding (299/906 nt) | insD1 | IS2 transposase TnpB |
| ? | CP009273 | 377513 = | NA (NA) | coding (384/906 nt) | insD1 | IS2 transposase TnpB | |||||