mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 4,637 | G→T | 9.6% | D302Y (GAC→TAC) | thrC → | L‑threonine synthase |
| RA | 8,846 | G→T | 8.7% | V203V (GTG→GTT) | talB → | transaldolase B |
| RA | 8,999 | G→T | 9.0% | E254D (GAG→GAT) | talB → | transaldolase B |
| RA | 17,959 | G→T | 8.5% | M157I (ATG→ATT) | nhaA → | sodium‑proton antiporter |
| RA | 18,056 | G→T | 8.7% | A190S (GCA→TCA) | nhaA → | sodium‑proton antiporter |
| RA | 21,504 | G→A | 12.1% | R33H (CGC→CAC) | ribF → | bifunctional riboflavin kinase/FAD synthetase |
| RA | 55,604 | C→A | 12.1% | P502P (CCG→CCT) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
| RA | 56,779 | G→T | 8.7% | H111N (CAT→AAT) | lptD ← | LPS assembly OM complex LptDE, beta‑barrel component |
| RA | 70,700 | C→A | 8.8% | P103P (CCG→CCT) | thiP ← | thiamine, thiamine pyrophosphate ABC transporter permease; ThiBPQ thiamine, thiamine pyrophosphate importer |
| RA | 71,655 | C→A | 10.5% | A105S (GCC→TCC) | thiB ← | thiamine‑, thiamine pyrophosphate‑, thiamine monophosphate‑binding ABC transporter periplasmic protein; ThiBPQ thiamine, thiamine pyrophosphate importer |
| RA | 92,872 | G→T | 12.5% | L128F (TTG→TTT) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide transferase |
| RA | 105,058 | G→A | 6.9% | C98Y (TGC→TAC) | secA → | preprotein translocase subunit, ATPase |
| RA | 118,852 | G→T | 15.0% | D92Y (GAC→TAC) | pdhR → | pyruvate dehydrogenase complex repressor; autorepressor |
| RA | 136,393 | G→T | 11.1% | A440A (GCC→GCA) | gcd ← | glucose dehydrogenase |
| RA | 154,513 | C→A | 14.0% | T367T (ACG→ACT) | pcnB ← | poly(A) polymerase |
| RA | 157,657 | G→T | 16.6% | S106* (TCG→TAG) | sfsA ← | sugar fermentation stimulation protein A |
| RA | 158,054 | G→T | 20.4% | Y155* (TAC→TAA) | ligT ← | 2'‑5' RNA ligase |
| RA | 170,009 | G→A | 7.4% | intergenic (+78/+80) | fhuB → / ← hemL | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components/glutamate‑1‑semialdehyde aminotransferase (aminomutase) |
| RA | 181,643 | G→T | 10.3% | V264V (GTC→GTA) | dapD ← | 2,3,4,5‑tetrahydropyridine‑2‑carboxylate N‑succinyltransferase |
| RA | 189,675 | C→T | 16.7% | T106M (ACG→ATG) | frr → | ribosome recycling factor |
| RA | 198,937 | T→A | 12.1% | F117Y (TTC→TAC) | fabZ → | (3R)‑hydroxymyristol acyl carrier protein dehydratase |
| RA | 200,791 | G→T | 21.0% | A319A (GCG→GCT) | lpxB → | tetraacyldisaccharide‑1‑P synthase |
| RA | 210,040 | G→T | 8.3% | G408V (GGG→GTG) | tilS → | tRNA(Ile)‑lysidine synthetase |
| RA | 212,305 | C→A | 11.5% | L184M (CTG→ATG) | nlpE → | lipoprotein involved with copper homeostasis and adhesion |
| RA | 219,047 | G→T | 31.6% | P29Q (CCA→CAA) | metN ← | DL‑methionine transporter subunit |
| RA | 221,373:1 | +G | 9.7% | noncoding (1116/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,380 | T→A | 10.2% | noncoding (1123/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,390 | Δ1 bp | 10.5% | noncoding (1133/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,391 | G→A | 10.5% | noncoding (1134/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,393 | C→T | 11.2% | noncoding (1136/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,395 | G→A | 11.0% | noncoding (1138/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,397 | C→T | 11.0% | noncoding (1140/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,398 | C→T | 11.0% | noncoding (1141/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,402 | A→C | 11.0% | noncoding (1145/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,407 | A→T | 11.4% | noncoding (1150/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,412 | A→T | 12.0% | noncoding (1155/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,420 | A→G | 12.0% | noncoding (1163/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,425 | T→C | 14.7% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 14.8% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 226,744 | C→A | 12.1% | G209* (GGA→TGA) | yafC ← | LysR family putative transcriptional regulator |
| RA | 229,282 | G→T | 10.8% | G387G (GGC→GGA) | mltD ← | putative membrane‑bound lytic murein transglycosylase D |
| RA | 229,309 | T→C | 7.4% | P378P (CCA→CCG) | mltD ← | putative membrane‑bound lytic murein transglycosylase D |
| RA | 230,873 | C→A | 9.7% | G133W (GGG→TGG) | gloB ← | hydroxyacylglutathione hydrolase |
| RA | 235,769 | G→T | 9.1% | pseudogene (177/273 nt) | yafF → | pseudogene, H repeat‑associated protein |
| RA | 235,820 | C→T | 10.5% | pseudogene (228/273 nt) | yafF → | pseudogene, H repeat‑associated protein |
| RA | 243,266 | C→A | 9.1% | S23* (TCA→TAA) | yafL → | putative lipoprotein and C40 family peptidase |
| RA | 244,210 | C→A | 14.8% | T29T (ACC→ACA) | rayT → | RAYT REP element‑mobilizing transposase; TnpA(REP) |
| RA | 253,708 | C→A | 10.2% | S232* (TCG→TAG) | frsA → | fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 253,740 | C→A | 11.8% | Q243K (CAG→AAG) | frsA → | fermentation‑respiration switch protein; PTS Enzyme IIA(Glc)‑binding protein; pNP‑butyrate esterase activity |
| RA | 259,761 | G→T | 9.3% | C66* (TGC→TGA) | ykfH ← | uncharacterized protein |
| RA | 259,764 | G→A | 9.3% | T65T (ACC→ACT) ‡ | ykfH ← | uncharacterized protein |
| RA | 259,766 | T→C | 9.3% | T65A (ACC→GCC) ‡ | ykfH ← | uncharacterized protein |
| RA | 259,770 | G→C | 9.3% | P63P (CCC→CCG) | ykfH ← | uncharacterized protein |
| RA | 262,378 | G→A | 8.9% | pseudogene (108/222 nt) | ykfL ← | pseudogene, CP4‑6 putative prophage remnant;Phage or Prophage Related |
| RA | 263,285 | G→A | 9.0% | D144D (GAC→GAT) | yafZ ← | CP4‑6 prophage; conserved protein |
| RA | 267,777 | T→C | 8.5% | pseudogene (303/426 nt) | insN → | pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 267,780 | C→T | 9.4% | pseudogene (306/426 nt) | insN → | pseudogene, IS911 transposase A;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 278,289 | G→T | 10.3% | G101C (GGC→TGC) | yagE → | 2‑keto‑3‑deoxy gluconate (KDG) aldolase; CP4‑6 prophage |
| RA | 279,245 | G→A | 12.9% | A112T (GCG→ACG) | yagF → | CP4‑6 prophage; dehydratase family protein |
| RA | 285,792 | G→T | 9.8% | T75T (ACC→ACA) | argF ← | ornithine carbamoyltransferase 2, chain F; CP4‑6 prophage |
| RA | 326,456 | G→T | 14.8% | G428V (GGG→GTG) | betT → | choline transporter of high affinity |
| RA | 331,873 | C→A | 14.9% | Q80K (CAA→AAA) | yahE → | DUF2877 family protein |
| RA | 344,127 | C→A | 14.3% | D10Y (GAC→TAC) | prpR ← | propionate catabolism operon regulatory protein |
| RA | 344,152 | C→A | 11.4% | M1M (ATG→ATT) † | prpR ← | propionate catabolism operon regulatory protein |
| RA | 359,172 | G→T | 12.5% | pseudogene (895/1125 nt) | lacZ ← | pseudogene, truncated |
| RA | 360,136 | C→A | 13.7% | intergenic (‑70/+525) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| RA | 382,955 | C→A | 12.1% | Q177K (CAG→AAG) | tauC → | taurine transporter subunit |
| RA | 385,920 | G→T | 15.0% | pseudogene (214/1458 nt) | yaiT → | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein |
| RA | 398,650 | G→T | 19.9% | intergenic (+32/‑87) | phoA → / → psiF | bacterial alkaline phosphatase/PsiF family protein |
| RA | 412,792 | C→A | 14.3% | I65I (ATC→ATA) | phoB → | response regulator in two‑component regulatory system with PhoR (or CreC) |
| RA | 417,461 | C→A | 8.7% | T340T (ACC→ACA) | proY → | proline‑specific permease |
| RA | 424,807 | G→A | 9.1% | A569T (GCA→ACA) | secD → | SecYEG protein translocase auxillary subunit |
| RA | 441,430 | C→G | 9.3% | T231T (ACG→ACC) | yajR ← | putative transporter |
| RA | 441,433 | C→T | 8.2% | S230S (TCG→TCA) | yajR ← | putative transporter |
| RA | 441,437 | Δ1 bp | 8.2% | coding (686/1365 nt) | yajR ← | putative transporter |
| RA | 441,438 | Δ1 bp | 8.2% | coding (685/1365 nt) | yajR ← | putative transporter |
| RA | 460,919 | G→T | 15.2% | H29N (CAT→AAT) | queC ← | 7‑cyano‑7‑deazaguanine (preQ0) synthase; queuosine biosynthesis |
| RA | 462,609 | C→A | 10.2% | E54* (GAG→TAG) | ybaE ← | putative ABC superfamily transporter periplasmic‑binding protein |
| RA | 492,228 | G→T | 7.8% | A551A (GCG→GCT) | htpG → | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 493,497 | G→T | 13.6% | intergenic (+222/‑14) | adk → / → hemH | adenylate kinase/ferrochelatase |
| RA | 495,712 | C→A | 13.3% | V44V (GTC→GTA) | gsk → | inosine/guanosine kinase |
| RA | 497,408 | G→T | 6.4% | G429G (GGC→GGA) | ybaL ← | inner membrane putative NAD(P)‑binding transporter |
| RA | 504,900 | C→T | 8.7% | A646T (GCA→ACA) | copA ← | copper transporter |
| RA | 518,956 | C→T | 10.2% | S80S (AGC→AGT) | rhsD → | Rhs family putative polymorphic toxin |
| RA | 518,965 | G→A | 11.3% | T83T (ACG→ACA) | rhsD → | Rhs family putative polymorphic toxin |
| RA | 518,968 | G→A | 11.4% | K84K (AAG→AAA) | rhsD → | Rhs family putative polymorphic toxin |
| RA | 518,974 | T→C | 10.9% | P86P (CCT→CCC) | rhsD → | Rhs family putative polymorphic toxin |
| RA | 518,977 | A→G | 11.4% | A87A (GCA→GCG) | rhsD → | Rhs family putative polymorphic toxin |
| RA | 526,421 | G→T | 10.9% | L88M (CTG→ATG) | mnmH ← | tRNA 2‑selenouridine synthase, selenophosphate‑dependent |
| RA | 527,329 | C→A | 16.6% | E117* (GAG→TAG) | allS ← | allD operon transcriptional activator |
| RA | 532,245 | G→T | 17.6% | Q68H (CAG→CAT) | glxR → | tartronate semialdehyde reductase, NADH‑dependent |
| RA | 539,265 | C→A | 10.8% | G80C (GGC→TGC) | allE ← | S‑ureidoglycine aminohydrolase |
| RA | 543,419 | C→A | 10.5% | A428A (GCC→GCA) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
| RA | 545,805 | G→T | 7.9% | A241A (GCG→GCT) | ylbF → | putative anaerobic allantoin catabolic oxamate carbamoyltransferase; DUF2877 family protein |
| RA | 553,739 | T→C | 14.1% | V24V (GTT→GTC) | sfmA → | FimA homolog |
| RA | 561,944 | C→T | 7.4% | pseudogene (113/312 nt) | peaD → | pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related |
| RA | 584,939 | C→A | 9.1% | R491L (CGG→CTG) | nfrA ← | bacteriophage N4 receptor, outer membrane subunit |
| RA | 591,009 | C→A | 15.4% | intergenic (‑110/‑47) | cusR ← / → cusC | response regulator in two‑component regulatory system with CusS/copper/silver efflux system, outer membrane component |
| RA | 622,035 | G→T | 8.4% | P170P (CCG→CCT) | entE → | 2,3‑dihydroxybenzoate‑AMP ligase component of enterobactin synthase multienzyme complex |
| RA | 641,279 | C→A | 9.1% | W253L (TGG→TTG) | citT ← | citrate:succinate antiporter |
| RA | 652,671 | G→T | 24.5% | intergenic (+98/‑77) | pagP → / → cspE | phospholipid:lipid A palmitoyltransferase/constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA‑binding protein |
| RA | 664,146 | C→A | 11.1% | G9V (GGA→GTA) | rlmH ← | 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM‑dependent |
| RA | 668,428 | C→A | 9.8% | A604A (GCG→GCT) | leuS ← | leucyl‑tRNA synthetase |
| RA | 687,586 | G→T | 8.7% | P71Q (CCG→CAG) | ybeY ← | ssRNA‑specific endoribonuclease; co‑endoribonuclease working with RNase R in 16S rRNA 3' end maturation and quality control; rRNA transcription antitermination factor |
| RA | 691,297 | G→T | 11.1% | A247A (GCG→GCT) | ubiF → | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase |
| RA | 706,027 | G→T | 14.3% | L26I (CTT→ATT) | fur ← | ferric iron uptake regulon transcriptional repressor; autorepressor |
| RA | 706,725 | C→A | 14.8% | W66L (TGG→TTG) | fldA ← | flavodoxin 1 |
| RA | 721,086 | C→A | 8.2% | M469I (ATG→ATT) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 721,403 | C→A | 12.2% | E364* (GAG→TAG) | kdpB ← | potassium translocating ATPase, subunit B |
| RA | 725,992 | C→A | 9.8% | P318P (CCC→CCA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 726,319 | G→C | 7.1% | A427A (GCG→GCC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,375 | A→G | 5.6% | G779G (GGA→GGG) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,989 | C→A | 15.0% | A984E (GCA→GAA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 728,560 | T→C | 7.7% | G1174G (GGT→GGC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 730,396 | G→A | 8.4% | pseudogene (808/1521 nt) | rhsO → | pseudogene, Rhs family protein |
| RA | 737,309 | C→A | 10.0% | W235L (TGG→TTG) | dtpD ← | dipeptide and tripeptide permease D |
| RA | 737,877 | G→T | 10.2% | H46N (CAC→AAC) | dtpD ← | dipeptide and tripeptide permease D |
| RA | 761,822 | C→A | 12.7% | P128H (CCC→CAC) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 765,245 | G→T | 8.0% | V604V (GTG→GTT) | mngB → | alpha‑mannosidase |
| RA | 774,866 | C→A | 7.3% | P115Q (CCG→CAG) | pal → | peptidoglycan‑associated outer membrane lipoprotein |
| RA | 802,032 | C→A | 16.2% | D236Y (GAT→TAT) | ybhC ← | acyl‑CoA thioesterase, lipoprotein |
| RA | 806,886 | G→A | 7.4% | P350P (CCG→CCA) | bioF → | 8‑amino‑7‑oxononanoate synthase |
| RA | 839,465 | C→A | 10.5% | R491L (CGG→CTG) | ybiO ← | mechanosensitive channel protein, intermediate conductance |
| RA | 864,995 | G→A | 9.3% | P43P (CCG→CCA) | gsiB → | glutathione periplasmic binding protein, ABC superfamily transporter |
| RA | 878,332 | C→A | 11.1% | M171I (ATG→ATT) | ybjG ← | undecaprenyl pyrophosphate phosphatase |
| RA | 878,491 | G→T | 10.0% | C118* (TGC→TGA) | ybjG ← | undecaprenyl pyrophosphate phosphatase |
| RA | 879,637 | G→T | 10.5% | W170L (TGG→TTG) | mdfA → | multidrug efflux system protein |
| RA | 909,817 | C→A | 8.7% | R166L (CGG→CTG) | ybjE ← | putative transporter |
| RA | 915,887 | C→A | 14.1% | L29I (CTC→ATC) | macB → | fused macrolide transporter subunits of ABC superfamily: ATP‑binding component/membrane component |
| RA | 920,462 | G→T | 14.3% | M581I (ATG→ATT) | clpA → | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
| RA | 934,045 | C→A | 8.5% | A199D (GCC→GAC) | rarA → | DNA‑dependent ATPase involved in processing recombination intermediates at replication forks |
| RA | 955,379 | C→A | 15.2% | P371Q (CCG→CAG) | aroA → | 5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| RA | 962,400 | G→T | 10.0% | M108I (ATG→ATT) | msbA → | fused lipid transporter subunits of ABC superfamily: membrane component/ATP‑binding component |
| RA | 962,409 | G→T | 8.7% | M111I (ATG→ATT) | msbA → | fused lipid transporter subunits of ABC superfamily: membrane component/ATP‑binding component |
| RA | 972,403 | G→T | 13.3% | G208W (GGG→TGG) | mukB → | chromosome condensin MukBEF, ATPase and DNA‑binding subunit |
| RA | 980,951 | G→T | 10.5% | P72H (CCT→CAT) | aspC ← | aspartate aminotransferase, PLP‑dependent |
| RA | 984,190 | C→A | 12.5% | P84P (CCG→CCT) | asnS ← | asparaginyl tRNA synthetase |
| RA | 996,321 | C→T | 8.7% | G550G (GGC→GGT) | elfC → | putative outer membrane fimbrial subunit export usher protein |
| RA | 1,062,007 | G→T | 11.4% | D323Y (GAT→TAT) | agp → | glucose‑1‑phosphatase/inositol phosphatase |
| RA | 1,067,029 | G→T | 14.3% | Q65K (CAG→AAG) | rutD ← | putative aminoacrylate hydrolase, reactive intermediate detoxification |
| RA | 1,069,700 | G→A | 8.3% | M1M (ATG→ATA) † | rutR → | rut operon transcriptional repressor for |
| RA | 1,073,043 | C→A | 9.3% | L432L (CTG→CTT) | putA ← | fused DNA‑binding transcriptional regulator/proline dehydrogenase/pyrroline‑5‑carboxylate dehydrogenase |
| RA | 1,083,580 | G→T | 18.2% | V578V (GTC→GTA) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine (PGA) N‑deacetylase outer membrane export lipoprotein |
| RA | 1,096,594:1 | +T | 7.8% | coding (547/834 nt) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,096,594:2 | +C | 7.8% | coding (547/834 nt) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,096,595:1 | +G | 7.8% | coding (546/834 nt) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,096,597:1 | +C | 7.8% | coding (544/834 nt) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,096,601 | A→C | 8.4% | N180K (AAT→AAG) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,096,602 | T→A | 7.8% | N180I (AAT→ATT) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,096,603 | T→C | 7.8% | N180D (AAT→GAT) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,096,604 | G→C | 9.5% | V179V (GTC→GTG) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,096,606 | C→G | 9.5% | V179L (GTC→CTC) ‡ | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,096,608 | A→C | 9.5% | V178G (GTC→GGC) | csgG ← | curli production assembly/transport outer membrane lipoprotein |
| RA | 1,102,798 | C→T | 9.7% | R330C (CGC→TGC) | clsC → | stationary phase cardiolipin synthase 3 |
| RA | 1,141,086 | C→A | 14.8% | L231M (CTG→ATG) | rluC → | 23S rRNA pseudouridine(955,2504,2580) synthase |
| RA | 1,152,569 | T→C | 9.5% | F113L (TTC→CTC) | ycfH → | putative DNase |
| RA | 1,161,147 | C→A | 15.4% | intergenic (+6/‑394) | ycfP → / → ndh | putative UPF0227 family esterase/respiratory NADH dehydrogenase 2/cupric reductase |
| RA | 1,162,287 | C→A | 14.3% | V249V (GTC→GTA) | ndh → | respiratory NADH dehydrogenase 2/cupric reductase |
| RA | 1,163,231 | G→T | 14.8% | V59V (GTG→GTT) | ycfJ → | uncharacterized protein |
| RA | 1,182,023 | C→A | 11.8% | H242N (CAT→AAT) | pepT → | peptidase T |
| RA | 1,199,424 | G→T | 8.9% | V49V (GTG→GTT) | ymfM → | e14 prophage; uncharacterized protein |
| RA | 1,200,177 | G→A | 11.4% | pseudogene (318/1134 nt) | aaaE → | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| RA | 1,200,659 | G→T | 16.0% | pseudogene (800/1134 nt) | aaaE → | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| RA | 1,211,410 | C→A | 27.7% | R56R (CGA→AGA) | ycgZ → | RcsB connector protein for regulation of biofilm and acid‑resistance |
| RA | 1,213,547 | G→T | 14.3% | R255L (CGG→CTG) | ycgG → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 1,213,606 | G→T | 16.6% | G275W (GGG→TGG) | ycgG → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 1,234,399 | G→A | 7.4% | R22H (CGC→CAC) | dadX → | alanine racemase, catabolic, PLP‑binding |
| RA | 1,244,316 | C→A | 12.1% | L85L (CTG→CTT) | dhaM ← | putative dihydroxyacetone‑specific PTS enzymes: HPr component/EI component |
| RA | 1,244,574 | C→A | 13.9% | intergenic (‑4/+7) | dhaM ← / ← dhaL | putative dihydroxyacetone‑specific PTS enzymes: HPr component/EI component/dihydroxyacetone kinase, C‑terminal domain |
| RA | 1,249,033 | C→A | 7.0% | L792L (CTG→CTT) | ycgV ← | putative adhesin |
| RA | 1,253,778 | C→A | 12.2% | P64P (CCG→CCT) | pth ← | peptidyl‑tRNA hydrolase |
| RA | 1,275,604 | C→A | 10.8% | R95R (CGC→CGA) | narG → | nitrate reductase 1, alpha subunit |
| RA | 1,282,249 | A→G | 13.7% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,286,472 | G→T | 8.7% | G259W (GGG→TGG) | rssB → | PcnB‑degradosome interaction factor; response regulator |
| RA | 1,293,266 | G→T | 9.3% | I104I (ATC→ATA) | adhE ← | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| RA | 1,294,195 | C→A | 8.3% | L48I (CTT→ATT) | ychE → | UPF0056 family inner membrane protein |
| RA | 1,301,877 | G→T | 10.8% | P342P (CCC→CCA) | clsA ← | cardiolipin synthase 1 |
| RA | 1,304,622 | G→T | 16.0% | intergenic (‑96/+204) | kch ← / ← yciI | voltage‑gated potassium channel/putative DGPF domain‑containing enzyme |
| RA | 1,311,002 | C→A | 9.3% | D160Y (GAC→TAC) | trpA ← | tryptophan synthase, alpha subunit |
| RA | 1,317,884 | C→A | 11.8% | G136G (GGC→GGA) | yciV → | PHP domain protein |
| RA | 1,320,770 | C→A | 10.0% | R590S (CGT→AGT) | yciQ → | enhancer of membrane protein expression; putative inner membrane protein |
| RA | 1,323,898 | T→C | 9.4% | W104R (TGG→CGG) | sohB → | inner membrane protein, S49 peptidase family protein |
| RA | 1,332,150 | C→A | 11.4% | P688Q (CCA→CAA) | acnA → | aconitate hydratase 1 |
| RA | 1,336,338 | G→T | 9.1% | G54V (GGG→GTG) | pyrF → | orotidine‑5'‑phosphate decarboxylase |
| RA | 1,338,256 | C→A | 11.1% | T116T (ACG→ACT) | yciT ← | global regulator of transcription; DeoR family |
| RA | 1,351,963 | G→T | 16.0% | intergenic (‑38/+96) | ymjA ← / ← puuP | DUF2543 family protein/putrescine importer |
| RA | 1,363,262 | C→A | 11.7% | P69T (CCG→ACG) | pspB → | psp operon transcription co‑activator |
| RA | 1,376,368 | C→A | 10.5% | V55V (GTC→GTA) | ompG → | outer membrane porin G |
| RA | 1,382,384 | C→T | 19.0% | R470C (CGC→TGC) | tyrR → | aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase |
| RA | 1,397,486 | G→A | 10.5% | D9D (GAC→GAT) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
| RA | 1,400,491 | G→A | 14.9% | A86T (GCG→ACG) | smrA → | DNA endonuclease |
| RA | 1,400,494:1 | +A | 15.0% | coding (259/564 nt) | smrA → | DNA endonuclease |
| RA | 1,400,494:2 | +T | 15.0% | coding (259/564 nt) | smrA → | DNA endonuclease |
| RA | 1,400,494:3 | +T | 15.0% | coding (259/564 nt) | smrA → | DNA endonuclease |
| RA | 1,414,474 | G→T | 10.5% | R9R (CGA→AGA) | racR ← | Rac prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,415,078 | G→T | 11.4% | K46N (AAG→AAT) | ydaT → | Rac prophage; uncharacterized protein |
| RA | 1,418,208 | G→T | 8.5% | W57L (TGG→TTG) | trkG → | Rac prophage; potassium transporter subunit |
| RA | 1,422,040 | A→G | 16.7% | pseudogene (944/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,060 | G→C | 12.6% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,098 | G→A | 5.0% | pseudogene (886/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,150 | C→T | 8.5% | pseudogene (834/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,627 | A→G | 9.0% | pseudogene (357/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,648 | G→C | 10.2% | pseudogene (336/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,438,987 | G→T | 10.8% | W560C (TGG→TGT) | ydbH → | putative membrane‑anchored protein, function unknown |
| RA | 1,444,897 | G→A | 11.7% | A237V (GCT→GTT) | tynA ← | tyramine oxidase, copper‑requiring |
| RA | 1,446,228 | G→T | 8.7% | L558I (CTC→ATC) | paaZ ← | fused oxepin‑CoA hydrolase/3‑oxo‑5,6‑dehydrosuberyl‑CoA semialdehyde dehydrogenase |
| RA | 1,449,534 | G→T | 14.8% | L38L (CTG→CTT) | paaC → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
| RA | 1,460,654 | G→T | 13.0% | pseudogene (1006/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,735 | G→T | 10.0% | pseudogene (1087/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,460,960 | A→C | 7.8% | pseudogene (1312/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,479,449 | G→T | 16.0% | R711L (CGG→CTG) | hrpA → | putative ATP‑dependent helicase |
| RA | 1,482,525 | G→T | 8.5% | G13* (GGA→TGA) | aldA → | aldehyde dehydrogenase A, NAD‑linked |
| RA | 1,485,993 | C→T | 8.5% | A20A (GCC→GCT) | ydcA → | putative periplasmic protein |
| RA | 1,487,412 | C→A | 14.9% | P229Q (CCA→CAA) | trg → | methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| RA | 1,502,545 | C→T | 12.1% | A503V (GCG→GTG) | ydcP → | putative peptidase |
| RA | 1,506,567 | G→A | 13.8% | Q219Q (CAG→CAA) | ydcS → | polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| RA | 1,513,512 | G→T | 18.2% | G77C (GGT→TGT) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
| RA | 1,531,318 | T→C | 8.8% | A83A (GCA→GCG) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,531,330 | A→G | 9.1% | D79D (GAT→GAC) | narW ← | nitrate reductase 2 (NRZ), delta subunit (assembly subunit) |
| RA | 1,544,807 | C→G | 14.4% | V30V (GTC→GTG) | fdnH → | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
| RA | 1,544,810 | A→G | 14.3% | A31A (GCA→GCG) | fdnH → | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
| RA | 1,544,816 | T→C | 13.6% | L33L (CTT→CTC) | fdnH → | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
| RA | 1,544,826 | T→A | 14.0% | S37T (TCC→ACC) | fdnH → | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
| RA | 1,544,867 | G→A | 13.9% | S50S (TCG→TCA) | fdnH → | formate dehydrogenase‑N, Fe‑S (beta) subunit, nitrate‑inducible |
| RA | 1,563,906 | G→T | 28.5% | H281N (CAT→AAT) | gadC ← | glutamate:gamma‑aminobutyric acid antiporter |
| RA | 1,590,333 | C→A | 8.5% | pseudogene (1912/5323 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,591,672 | C→A | 19.4% | pseudogene (573/5323 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,601,297 | G→T | 22.5% | K14N (AAG→AAT) | lsrG → | autoinducer‑2 (AI‑2) degrading protein LsrG |
| RA | 1,639,319 | C→A | 16.0% | intergenic (‑160/+57) | rem ← / ← hokD | Qin prophage; uncharacterized protein/Qin prophage; small toxic polypeptide |
| RA | 1,639,861 | C→A | 11.7% | R10R (CGG→CGT) | relE ← | Qin prophage; toxin of the RelE‑RelB toxin‑antitoxin system |
| RA | 1,653,432 | C→A | 12.5% | P369P (CCC→CCA) | ynfE → | putative selenate reductase, periplasmic |
| RA | 1,660,511 | G→T | 11.8% | G314C (GGT→TGT) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,660,591 | G→T | 12.7% | L340L (CTG→CTT) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,660,593 | G→T | 10.8% | G341V (GGA→GTA) | clcB → | H(+)/Cl(‑) exchange transporter |
| RA | 1,707,557 | G→T | 14.3% | G178C (GGC→TGC) | dtpA → | dipeptide and tripeptide permease A |
| RA | 1,709,192 | G→T | 13.3% | E187* (GAA→TAA) | gstA → | glutathionine S‑transferase |
| RA | 1,712,912 | G→T | 14.3% | V316V (GTC→GTA) | anmK ← | anhydro‑N‑acetylmuramic acid kinase |
| RA | 1,716,344 | C→T | 10.8% | S275L (TCG→TTG) | ydhJ → | putative membrane fusion protein (MFP) of YdhJK efflux pump |
| RA | 1,720,134 | C→T | 15.9% | R15Q (CGG→CAG) | ydhL ← | DUF1289 family protein |
| RA | 1,720,140 | G→T | 16.6% | P13Q (CCG→CAG) | ydhL ← | DUF1289 family protein |
| RA | 1,720,375 | C→A | 22.2% | S32R (AGC→AGA) | nemR → | transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated |
| RA | 1,740,064 | G→T | 8.7% | F107L (TTC→TTA) | ydhQ ← | autotransporter adhesin‑related protein |
| RA | 1,745,048 | G→T | 8.9% | P75T (CCA→ACA) | ydhX ← | putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| RA | 1,748,378 | G→T | 10.6% | T119T (ACC→ACA) | ydhY ← | putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| RA | 1,761,307 | C→A | 11.4% | D546Y (GAT→TAT) | ydiJ ← | putative FAD‑linked oxidoreductase |
| RA | 1,766,533 | G→T | 10.8% | P402P (CCG→CCT) | ydiM → | MFS superfamily sugar transport 1 family protein |
| RA | 1,769,605 | G→T | 14.3% | S221S (TCG→TCT) | aroD → | 3‑dehydroquinate dehydratase |
| RA | 1,769,623 | G→T | 16.0% | A227A (GCG→GCT) | aroD → | 3‑dehydroquinate dehydratase |
| RA | 1,788,112 | G→T | 12.2% | T85T (ACC→ACA) | btuE ← | glutathione peroxidase |
| RA | 1,800,930 | G→T | 10.2% | E102* (GAG→TAG) | pfkB → | 6‑phosphofructokinase II |
| RA | 1,814,601 | G→T | 10.5% | H291N (CAT→AAT) | chbC ← | N,N'‑diacetylchitobiose‑specific enzyme IIC component of PTS |
| RA | 1,822,460 | C→A | 18.2% | A19A (GCG→GCT) | astB ← | succinylarginine dihydrolase |
| RA | 1,823,875 | G→T | 10.1% | V39V (GTC→GTA) | astD ← | succinylglutamic semialdehyde dehydrogenase |
| RA | 1,835,295 | C→A | 10.4% | T122T (ACG→ACT) | ynjF ← | inner membrane protein, phosphatidylglycerophosphate synthase homolog |
| RA | 1,848,721 | G→T | 10.2% | L131M (CTG→ATG) | ydjF ← | putative DNA‑binding transcriptional regulator |
| RA | 1,862,594 | C→A | 10.8% | P477Q (CCG→CAG) | yeaG → | protein kinase, endogenous substrate unidentified; autokinase |
| RA | 1,871,683 | G→T | 25.0% | P36Q (CCG→CAG) | yoaF ← | DUF333 family outer membrane lipoprotein |
| RA | 1,885,217 | C→A | 9.4% | W103L (TGG→TTG) | tsaB ← | tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD |
| RA | 1,892,625 | C→A | 11.8% | intergenic (+72/‑59) | sdaA → / → yoaD | L‑serine dehydratase 1/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase, regulator of cellulose production |
| RA | 1,897,603 | C→A | 8.7% | H89N (CAT→AAT) | manY → | mannose‑specific enzyme IIC component of PTS |
| RA | 1,936,706 | C→A | 13.7% | G45G (GGG→GGT) | znuA ← | zinc transporter subunit: periplasmic‑binding component of ABC superfamily |
| RA | 1,938,193 | G→T | 10.5% | V175L (GTG→TTG) | znuB → | zinc transporter subunit: membrane component of ABC superfamily |
| RA | 1,938,651 | C→A | 8.9% | T321T (ACG→ACT) | ruvB ← | ATP‑dependent DNA helicase, component of RuvABC resolvasome |
| RA | 1,952,187 | Δ1 bp | 17.4% | coding (203/1101 nt) | torY ← | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| RA | 1,952,188 | Δ1 bp | 17.4% | coding (202/1101 nt) | torY ← | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| RA | 1,952,189 | Δ1 bp | 17.4% | coding (201/1101 nt) | torY ← | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| RA | 1,952,190 | Δ1 bp | 17.4% | coding (200/1101 nt) | torY ← | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| RA | 1,955,765 | G→A | 7.1% | A483T (GCA→ACA) | argS → | arginyl‑tRNA synthetase |
| RA | 1,971,863 | C→T | 7.4% | W80* (TGG→TAG) | flhC ← | flagellar class II regulon transcriptional activator, with FlhD |
| RA | 2,039,793 | C→A | 11.4% | L459M (CTG→ATG) | yeeJ → | putative adhesin |
| RA | 2,040,631 | C→T | 11.5% | A738V (GCG→GTG) | yeeJ → | putative adhesin |
| RA | 2,069,689 | G→T | 8.3% | G477V (GGA→GTA) | yeeR → | CP4‑44 prophage; putative membrane protein |
| RA | 2,074,114 | C→A | 9.7% | intergenic (‑42/+156) | yeeA ← / ← sbmC | putative transporter, FUSC family inner membrane protein/DNA gyrase inhibitor |
| RA | 2,090,661 | G→T | 10.5% | L189L (CTG→CTT) | hisI → | fused phosphoribosyl‑AMP cyclohydrolase/phosphoribosyl‑ATP pyrophosphatase |
| RA | 2,090,712 | G→T | 16.7% | intergenic (+6/+90) | hisI → / ← wzzB | fused phosphoribosyl‑AMP cyclohydrolase/phosphoribosyl‑ATP pyrophosphatase/regulator of length of O‑antigen component of lipopolysaccharide chains |
| RA | 2,142,251 | C→A | 10.5% | A366D (GCT→GAT) | yegD → | Hsp70 chaperone family protein |
| RA | 2,142,886 | G→T | 18.8% | G527G (GGC→GGA) | yegI ← | protein kinase‑related putative non‑specific DNA‑binding protein |
| RA | 2,147,249 | G→T | 10.5% | noncoding (125/136 nt) | sibB → | sRNA antisense regulator of toxic IbsB protein |
| RA | 2,147,254 | G→T | 10.3% | noncoding (130/136 nt) | sibB → | sRNA antisense regulator of toxic IbsB protein |
| RA | 2,152,649 | G→T | 12.9% | T261T (ACG→ACT) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,154,686 | G→T | 5.1% | Q940H (CAG→CAT) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,156,638 | C→A | 13.3% | P94P (CCC→CCA) | baeS → | sensory histidine kinase in two‑component regulatory system with BaeR |
| RA | 2,157,596 | G→T | 15.3% | G414C (GGT→TGT) | baeS → | sensory histidine kinase in two‑component regulatory system with BaeR |
| RA | 2,169,651 | G→T | 18.2% | V50V (GTC→GTA) | gatZ ← | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| RA | 2,199,599 | C→A | 9.5% | F142L (TTC→TTA) | yehM → | uncharacterized protein |
| RA | 2,226,187 | G→T | 14.3% | D289Y (GAC→TAC) | cdd → | cytidine/deoxycytidine deaminase |
| RA | 2,226,488 | C→T | 6.6% | Y44Y (TAC→TAT) | sanA → | vancomycin high temperature exclusion protein, DUF218 superfamily protein |
| RA | 2,246,913 | C→A | 10.8% | E238* (GAA→TAA) | nupX ← | nucleoside permease |
| RA | 2,253,344 | C→A | 11.1% | G516C (GGT→TGT) | fruA ← | fused fructose‑specific PTS enzymes: IIBcomponent/IIC components |
| RA | 2,277,794 | C→A | 8.9% | R63S (CGC→AGC) | yejL → | UPF0352 family protein |
| RA | 2,279,471 | C→A | 18.3% | T539T (ACC→ACA) | yejM → | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| RA | 2,279,474 | C→A | 20.0% | T540T (ACC→ACA) | yejM → | essential inner membrane DUF3413 domain‑containing protein; lipid A production and membrane permeability factor |
| RA | 2,297,540 | G→T | 20.2% | E53* (GAA→TAA) | eco → | ecotin, a serine protease inhibitor |
| RA | 2,298,241 | T→C | 9.3% | intergenic (+369/+346) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,298,492 | A→G | 12.4% | intergenic (+620/+95) | eco → / ← mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,300,830 | G→T | 11.7% | P422Q (CCG→CAG) | yojI ← | microcin J25 efflux pump, TolC‑dependent; fused ABC transporter permease and ATP‑binding components |
| RA | 2,304,639 | G→T | 19.3% | V125V (GTC→GTA) | apbE ← | putative thiamine‑synthetic flavin transferase lipoprotein |
| RA | 2,317,870 | G→T | 16.8% | A95S (GCC→TCC) | atoA → | acetyl‑CoA:acetoacetyl‑CoA transferase, beta subunit |
| RA | 2,325,186 | C→A | 8.9% | pseudogene (2696/4605 nt) | yfaS ← | pseudogene, bacterial alpha2‑macroglobulin YfaS variant family; putative membrane protein |
| RA | 2,328,581 | C→A | 14.3% | E515* (GAA→TAA) | yfaA ← | DUF2138 family protein, putative host defense protein |
| RA | 2,334,747 | C→T | 8.1% | A968T (GCA→ACA) | yfaL ← | adhesin |
| RA | 2,354,663 | G→T | 11.5% | T77T (ACC→ACA) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,369,519 | C→A | 20.7% | T260T (ACG→ACT) | menB ← | dihydroxynaphthoic acid synthetase |
| RA | 2,373,753 | G→A | 24.4% | R124W (CGG→TGG) | menF ← | isochorismate synthase 2 |
| RA | 2,376,373 | G→T | 12.4% | G61V (GGG→GTG) | elaD → | protease, capable of cleaving an AMC‑ubiquitin model substrate |
| RA | 2,380,935 | G→T | 19.0% | intergenic (+19/+254) | yfbM → / ← yfbN | DUF1877 family protein/uncharacterized protein |
| RA | 2,384,196 | C→A | 10.0% | V263V (GTG→GTT) | nuoN ← | NADH:ubiquinone oxidoreductase, membrane subunit N |
| RA | 2,386,717 | G→T | 8.0% | V603V (GTC→GTA) | nuoL ← | NADH:ubiquinone oxidoreductase, membrane subunit L |
| RA | 2,396,003 | G→T | 12.4% | S441Y (TCT→TAT) | nuoC ← | NADH:ubiquinone oxidoreductase, fused CD subunit |
| RA | 2,399,973 | C→A | 8.0% | E50* (GAA→TAA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,414,179 | G→A | 13.3% | R27H (CGC→CAC) | yfcG → | GSH‑dependent disulfide bond oxidoreductase |
| RA | 2,415,935 | C→A | 7.6% | P250H (CCC→CAC) | yfcH → | putative NAD‑dependent nucleotide‑sugar epimerase |
| RA | 2,416,554 | C→T | 5.3% | P155P (CCG→CCA) | yfcI ← | transposase_31 family protein |
| RA | 2,418,629 | C→A | 10.2% | W28C (TGG→TGT) | hisM ← | histidine/lysine/arginine/ornithine transporter subunit |
| RA | 2,424,152 | G→T | 8.0% | L31M (CTG→ATG) | cvpA ← | colicin V production membrane protein |
| RA | 2,425,165 | G→A | 9.8% | S419S (AGC→AGT) | folC ← | bifunctional folylpolyglutamate synthase/ dihydrofolate synthase |
| RA | 2,429,732 | G→T | 13.8% | L133M (CTG→ATG) | usg ← | putative semialdehyde dehydrogenase |
| RA | 2,446,086 | C→T | 10.5% | pseudogene (2395/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| RA | 2,452,231 | G→T | 9.5% | L136L (CTC→CTA) | fadJ ← | fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,461,794 | G→T | 13.8% | V34V (GTG→GTT) | gtrB → | CPS‑53 (KpLE1) prophage; bactoprenol glucosyl transferase |
| RA | 2,487,702 | Δ1 bp | 10.3% | coding (180/636 nt) | yfdX ← | uncharacterized protein |
| RA | 2,487,703 | Δ1 bp | 10.3% | coding (179/636 nt) | yfdX ← | uncharacterized protein |
| RA | 2,487,706 | Δ1 bp | 10.3% | coding (176/636 nt) | yfdX ← | uncharacterized protein |
| RA | 2,487,707 | Δ1 bp | 10.0% | coding (175/636 nt) | yfdX ← | uncharacterized protein |
| RA | 2,487,708 | Δ1 bp | 10.0% | coding (174/636 nt) | yfdX ← | uncharacterized protein |
| RA | 2,487,709 | C→G | 9.5% | R58P (CGT→CCT) | yfdX ← | uncharacterized protein |
| RA | 2,511,976 | G→T | 9.6% | G11C (GGC→TGC) | yfeC → | DUF1323 family putative DNA‑binding protein |
| RA | 2,519,664 | G→T | 9.6% | P184P (CCC→CCA) | yfeR ← | transcriptional regulator of yefH |
| RA | 2,532,503 | G→T | 10.4% | P147H (CCT→CAT) | cysM ← | cysteine synthase B (O‑acetylserine sulfhydrolase B) |
| RA | 2,556,277 | G→T | 11.0% | R132L (CGG→CTG) | yffP → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,566,156 | C→A | 15.9% | E237* (GAG→TAG) | eutD ← | phosphate acetyltransferase |
| RA | 2,570,830 | G→T | 7.1% | P303T (CCG→ACG) | maeB ← | malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
| RA | 2,572,583 | G→A | 8.5% | A187T (GCA→ACA) | talA → | transaldolase A |
| RA | 2,578,333 | G→T | 14.8% | V184V (GTC→GTA) | aegA ← | putative oxidoreductase, FeS binding subunit/NAD/FAD‑binding subunit |
| RA | 2,597,610 | C→A | 8.9% | A135A (GCC→GCA) | hyfC → | hydrogenase 4, membrane subunit |
| RA | 2,599,168 | C→A | 11.5% | I333I (ATC→ATA) | hyfD → | hydrogenase 4, membrane subunit |
| RA | 2,612,133 | C→A | 11.1% | M1L (CTG→CTT) † | hda ← | ATPase regulatory factor involved in DnaA inactivation |
| RA | 2,612,377 | C→A | 12.1% | K381N (AAG→AAT) | uraA ← | uracil permease |
| RA | 2,618,860 | G→T | 15.0% | V129V (GTG→GTT) | ppx → | exopolyphosphatase |
| RA | 2,620,920 | C→A | 17.5% | G460* (GGA→TGA) | yfgF ← | cyclic‑di‑GMP phosphodiesterase, anaerobic |
| RA | 2,629,905 | C→A | 9.6% | E271* (GAG→TAG) | der ← | GTPase; multicopy suppressor of ftsJ |
| RA | 2,651,338 | C→T | 6.6% | L319L (CTG→CTA) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,664,116 | G→T | 12.1% | R123L (CGG→CTG) | hcaF → | 3‑phenylpropionate dioxygenase, small (beta) subunit |
| RA | 2,669,445 | G→T | 9.1% | S247Y (TCT→TAT) | yphD ← | inner membrane putative ABC superfamily sugar transporter permease |
| RA | 2,676,031 | G→T | 12.1% | P25H (CCC→CAC) | yphG ← | DUF4380 domain‑containing TPR repeat protein |
| RA | 2,702,470 | C→A | 14.0% | A98A (GCG→GCT) | rseA ← | anti‑sigma factor |
| RA | 2,704,572:1 | +G | 9.1% | coding (794/1623 nt) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,704,572:2 | +T | 9.1% | coding (794/1623 nt) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,704,573:1 | +T | 9.1% | coding (795/1623 nt) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,704,573:2 | +T | 9.1% | coding (795/1623 nt) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,704,573:3 | +T | 9.1% | coding (795/1623 nt) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,704,573:4 | +T | 9.1% | coding (795/1623 nt) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,704,573:5 | +T | 9.1% | coding (795/1623 nt) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,704,573:6 | +C | 9.1% | coding (795/1623 nt) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,704,573:7 | +T | 9.1% | coding (795/1623 nt) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,704,574:1 | +A | 9.5% | coding (796/1623 nt) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,704,575 | G→C | 9.5% | G266A (GGC→GCC) | nadB → | quinolinate synthase, L‑aspartate oxidase (B protein) subunit |
| RA | 2,708,821 | C→A | 16.1% | L14M (CTG→ATG) | eamB → | cysteine and O‑acetylserine exporter |
| RA | 2,712,118 | C→A | 14.3% | Q9K (CAG→AAG) | trxC → | thioredoxin 2 |
| RA | 2,719,426 | T→C | 8.7% | intergenic (‑321/+2) | kgtP ← / ← rrfG | alpha‑ketoglutarate transporter/5S ribosomal RNA of rrnG operon |
| RA | 2,745,706 | G→A | 7.4% | A185T (GCC→ACC) | recN → | recombination and repair protein |
| RA | 2,762,388 | C→T | 6.5% | A122V (GCG→GTG) | yfjQ → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,764,424 | C→A | 12.4% | H129N (CAT→AAT) | yfjS → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,771,529 | T→C | 8.7% | V1519V (GTA→GTG) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,790,963 | G→T | 9.1% | E29* (GAA→TAA) | ygaP → | DUF2892 family inner membrane rhodanese |
| RA | 2,796,344 | G→A | 13.9% | T546T (ACG→ACA) | nrdE → | ribonucleoside‑diphosphate reductase 2, alpha subunit |
| RA | 2,811,690 | G→T | 8.3% | intergenic (‑57/+142) | argY ← / ← argV | tRNA‑Arg/tRNA‑Arg |
| RA | 2,830,786 | G→T | 12.9% | intergenic (‑2/+151) | hypF ← / ← hydN | carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases/formate dehydrogenase‑H, [4Fe‑4S] ferredoxin subunit |
| RA | 2,833,653 | G→T | 8.8% | L257F (TTG→TTT) | ascF → | fused cellobiose/arbutin/salicin‑specific PTS enzymes: IIB component/IC component |
| RA | 2,840,356 | G→A | 11.4% | P139L (CCG→CTG) | hycD ← | hydrogenase 3, membrane subunit |
| RA | 2,845,630 | C→A | 16.2% | H46N (CAC→AAC) | hypD → | hydrogenase maturation protein |
| RA | 2,849,050 | G→T | 23.5% | G452C (GGT→TGT) | fhlA → | formate hydrogenlyase transcriptional activator |
| RA | 2,860,197 | C→A | 11.5% | L238L (CTG→CTT) | rpoS ← | RNA polymerase, sigma S (sigma 38) factor |
| RA | 2,870,075 | G→T | 13.3% | G46* (GGA→TGA) | iap → | aminopeptidase in alkaline phosphatase isozyme conversion |
| RA | 2,877,093 | C→A | 8.9% | Q135H (CAG→CAT) | casA ← | CRISP RNA (crRNA) containing Cascade antiviral complex protein |
| RA | 2,878,016 | C→A | 12.5% | G855W (GGG→TGG) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| RA | 2,879,148 | C→A | 12.2% | G477G (GGG→GGT) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| RA | 2,879,154 | C→A | 11.8% | V475V (GTG→GTT) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| RA | 2,883,659 | G→T | 10.8% | R533R (CGC→CGA) | cysJ ← | sulfite reductase, alpha subunit, flavoprotein |
| RA | 2,889,599 | G→A | 10.0% | R106C (CGC→TGC) | ygcR ← | putative flavoprotein |
| RA | 2,910,444 | C→A | 13.3% | P677T (CCC→ACC) | barA → | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| RA | 2,940,371 | G→T | 11.4% | A56D (GCC→GAC) | mltA ← | membrane‑bound lytic murein transglycosylase A |
| RA | 2,942,519 | C→A | 14.4% | intergenic (‑150/‑82) | amiC ← / → argA | N‑acetylmuramoyl‑L‑alanine amidase/fused acetylglutamate kinase homolog (inactive)/amino acid N‑acetyltransferase |
| RA | 2,944,482 | C→A | 8.9% | G447W (GGG→TGG) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 2,951,519 | G→T | 10.8% | P242Q (CCG→CAG) | ptrA ← | protease III |
| RA | 2,953,464 | C→A | 13.8% | R775M (AGG→ATG) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,960,774 | C→A | 24.4% | Q340H (CAG→CAT) | ptsP ← | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
| RA | 2,969,171 | C→T | 7.8% | R68H (CGT→CAT) | aas ← | fused 2‑acylglycerophospho‑ethanolamine acyl transferase/acyl‑acyl carrier protein synthetase |
| RA | 2,970,855 | G→T | 12.1% | A300S (GCC→TCC) | galR → | galactose‑inducible d‑galactose regulon transcriptional repressor; autorepressor |
| RA | 2,974,376 | G→T | 8.0% | P389Q (CCG→CAG) | araE ← | arabinose transporter |
| RA | 3,003,494 | G→A | 8.5% | S36S (TCG→TCA) | hyuA → | D‑stereospecific phenylhydantoinase |
| RA | 3,006,905 | C→A | 12.2% | G232C (GGT→TGT) | yqeB ← | XdhC‑CoxI family protein with NAD(P)‑binding Rossman fold |
| RA | 3,011,257 | C→T | 5.4% | H613H (CAC→CAT) | ygfK → | putative Fe‑S subunit oxidoreductase subunit |
| RA | 3,014,504 | G→A | 9.3% | L202L (CTG→CTA) | ygfM → | putative oxidoreductase |
| RA | 3,015,686 | C→A | 15.6% | Q338K (CAG→AAG) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,016,155 | G→T | 10.8% | G494V (GGA→GTA) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,030,858 | C→A | 24.2% | R203L (CGC→CTC) | recJ ← | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| RA | 3,034,848 | C→A | 11.3% | L59L (CTC→CTA) | ygfZ → | iron‑sulfur cluster repair protein, plumbagin resistance |
| RA | 3,060,756 | C→A | 13.8% | V228V (GTG→GTT) | yggE ← | oxidative stress defense protein |
| RA | 3,064,718 | T→G | 14.2% | intergenic (‑115/+100) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase, class II/phosphoglycerate kinase |
| RA | 3,092,294 | G→T | 19.5% | Q211K (CAA→AAA) | yggM ← | DUF1202 family putative secreted protein |
| RA | 3,092,297 | G→T | 18.3% | H210N (CAC→AAC) | yggM ← | DUF1202 family putative secreted protein |
| RA | 3,176,755 | G→T | 8.9% | intergenic (+73/+417) | zupT → / ← ribB | zinc transporter/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,187,660 | C→A | 13.7% | Q480K (CAG→AAG) | yqiK → | PHB family membrane protein, function unknown |
| RA | 3,191,316 | G→A | 16.9% | S562L (TCG→TTG) | glnE ← | fused deadenylyltransferase/adenylyltransferase for glutamine synthetase |
| RA | 3,199,966 | G→T | 13.3% | G49W (GGG→TGG) | ttdA → | L‑tartrate dehydratase, alpha subunit |
| RA | 3,206,781 | G→T | 8.8% | G126W (GGG→TGG) | rpoD → | RNA polymerase, sigma 70 (sigma D) factor |
| RA | 3,243,689 | G→A | 8.2% | W85* (TGG→TAG) | yqjK → | uncharacterized protein |
| RA | 3,246,787 | G→A | 17.4% | P263S (CCG→TCG) | yhaJ ← | LysR family putative transcriptional regulator |
| RA | 3,283,044 | C→A | 8.9% | P291Q (CCA→CAA) | yraJ → | putative outer membrane protein |
| RA | 3,291,154 | C→A | 14.2% | G115V (GGA→GTA) | yraQ ← | putative inner membrane permease |
| RA | 3,295,400 | C→A | 12.1% | S186* (TCG→TAG) | yhbU → | U32 peptidase family protein |
| RA | 3,324,611 | G→T | 10.0% | P168Q (CCA→CAA) | obgE ← | GTPase involved in cell partioning and DNA repair |
| RA | 3,325,098 | C→A | 9.6% | E6* (GAA→TAA) | obgE ← | GTPase involved in cell partioning and DNA repair |
| RA | 3,335,186 | G→T | 10.0% | D188Y (GAT→TAT) | kdsD → | D‑arabinose 5‑phosphate isomerase |
| RA | 3,346,182 | C→A | 8.9% | W68L (TGG→TTG) | arcB ← | aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| RA | 3,371,653 | G→T | 13.0% | R120S (CGT→AGT) | rplM ← | 50S ribosomal subunit protein L13 |
| RA | 3,371,728 | G→T | 13.0% | R95S (CGC→AGC) | rplM ← | 50S ribosomal subunit protein L13 |
| RA | 3,372,589 | G→T | 7.8% | I256I (ATC→ATA) | yhcM ← | putative AFG1‑like family P‑loop ATPase |
| RA | 3,383,509 | C→A | 11.4% | R211S (CGC→AGC) | aaeR → | transcriptional regulator for aaeXAB operon |
| RA | 3,383,535 | G→T | 12.1% | V219V (GTG→GTT) | aaeR → | transcriptional regulator for aaeXAB operon |
| RA | 3,391,324 | G→T | 9.1% | V138V (GTC→GTA) | yhdE ← | Maf‑like protein |
| RA | 3,401,275 | C→A | 13.0% | R104S (CGC→AGC) | panF → | pantothenate:sodium symporter |
| RA | 3,414,848 | G→T | 8.9% | W55C (TGG→TGT) | yhdY → | putative amino‑acid transporter subunit |
| RA | 3,416,890 | T→G | 7.3% | noncoding (12/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,416,899 | A→G | 20.5% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,430,152 | C→A | 9.3% | T92T (ACC→ACA) | trkA → | NAD‑binding component of TrK potassium transporter |
| RA | 3,432,793 | C→A | 21.5% | G26C (GGT→TGT) | yhdN ← | DUF1992 family protein |
| RA | 3,464,590 | G→A | 7.7% | T33T (ACC→ACT) | tufA ← | translation elongation factor EF‑Tu 1 |
| RA | 3,506,059 | G→T | 12.3% | A313A (GCC→GCA) | trpS ← | tryptophanyl‑tRNA synthetase |
| RA | 3,506,560 | C→A | 9.1% | V146V (GTG→GTT) | trpS ← | tryptophanyl‑tRNA synthetase |
| RA | 3,506,854 | G→T | 14.8% | T48T (ACC→ACA) | trpS ← | tryptophanyl‑tRNA synthetase |
| RA | 3,506,898 | C→A | 20.1% | D34Y (GAC→TAC) | trpS ← | tryptophanyl‑tRNA synthetase |
| RA | 3,508,490 | C→A | 24.0% | V261V (GTG→GTT) | dam ← | DNA adenine methyltransferase |
| RA | 3,514,955 | C→A | 12.1% | G126V (GGG→GTG) | hofN ← | DNA catabolic putative fimbrial assembly protein |
| RA | 3,516,970 | G→T | 8.5% | A247A (GCG→GCT) | mrcA → | fused penicillin‑binding protein 1a: murein transglycosylase/murein transpeptidase |
| RA | 3,531,404 | C→A | 8.9% | H221N (CAC→AAC) | yhgF → | putative transcriptional accessory protein |
| RA | 3,541,843 | C→T | 9.3% | T529T (ACG→ACA) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
| RA | 3,571,258 | G→T | 11.2% | H277N (CAT→AAT) | gntR ← | d‑gluconate inducible gluconate regulon transcriptional repressor |
| RA | 3,594,366 | G→A | 14.3% | intergenic (‑223/+22) | rpoH ← / ← ftsX | RNA polymerase, sigma 32 (sigma H) factor/inner membrane putative ABC superfamily transporter permease |
| RA | 3,594,628 | C→T | 9.5% | L273L (CTG→CTA) | ftsX ← | inner membrane putative ABC superfamily transporter permease |
| RA | 3,595,604 | C→A | 14.3% | L168L (CTG→CTT) | ftsE ← | putative ABC superfamily transporter ATP‑binding subunit |
| RA | 3,664,283 | G→T | 8.0% | L444L (CTG→CTT) | treF → | cytoplasmic trehalase |
| RA | 3,669,598 | C→A | 8.3% | intergenic (+130/+52) | yhjE → / ← yhjG | MFS superfamily sugar transport 1 family protein/putative inner membrane‑anchored periplasmic AsmA family protein |
| RA | 3,684,088 | C→A | 10.5% | W627L (TGG→TTG) | bcsB ← | regulator of cellulose synthase, cyclic di‑GMP binding |
| RA | 3,694,012 | G→T | 11.9% | A30A (GCG→GCT) | yhjV → | putative transporter |
| RA | 3,706,750 | G→T | 7.6% | R100L (CGG→CTG) | tag → | 3‑methyl‑adenine DNA glycosylase I, constitutive |
| RA | 3,709,842 | C→A | 9.7% | intergenic (‑88/‑65) | bisC ← / → yiaD | biotin sulfoxide reductase/multicopy suppressor of bamB; outer membrane lipoprotein |
| RA | 3,718,101 | G→T | 15.4% | T193N (ACC→AAC) | glyQ ← | glycine tRNA synthetase, alpha subunit |
| RA | 3,726,441 | G→T | 9.7% | G294V (GGA→GTA) | xylG → | fused D‑xylose transporter subunits of ABC superfamily: ATP‑binding components |
| RA | 3,735,575 | C→T | 6.6% | P106P (CCG→CCA) | yiaJ ← | transcriptional repressor of yiaK‑S operon |
| RA | 3,748,938 | G→T | 8.3% | R312S (CGT→AGT) | aldB ← | aldehyde dehydrogenase B |
| RA | 3,754,206 | G→T | 12.2% | A135E (GCG→GAG) | selA ← | selenocysteine synthase |
| RA | 3,759,824 | C→A | 9.8% | S43Y (TCT→TAT) | yibA → | HEAT‑domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA |
| RA | 3,760,562 | G→T | 10.8% | intergenic (+23/‑19) | yibA → / → rhsJ | HEAT‑domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA/Rhs‑family protein |
| RA | 3,760,566 | A→G | 10.8% | intergenic (+27/‑15) | yibA → / → rhsJ | HEAT‑domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA/Rhs‑family protein |
| RA | 3,760,577 | C→T | 9.3% | intergenic (+38/‑4) | yibA → / → rhsJ | HEAT‑domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA/Rhs‑family protein |
| RA | 3,760,578 | A→G | 9.5% | intergenic (+39/‑3) | yibA → / → rhsJ | HEAT‑domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA/Rhs‑family protein |
| RA | 3,760,579:1 | +T | 10.0% | intergenic (+40/‑2) | yibA → / → rhsJ | HEAT‑domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA/Rhs‑family protein |
| RA | 3,780,053 | G→T | 11.9% | V478V (GTG→GTT) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| RA | 3,807,511 | G→T | 11.1% | G74* (GGA→TGA) | dut → | deoxyuridinetriphosphatase |
| RA | 3,819,515 | C→A | 10.9% | H316N (CAC→AAC) | recG → | ATP‑dependent DNA helicase |
| RA | 3,827,450 | T→C | 5.1% | M150V (ATG→GTG) | yicI ← | putative alpha‑glucosidase |
| RA | 3,828,544 | C→A | 9.7% | G249V (GGG→GTG) | yicJ ← | putative transporter |
| RA | 3,829,092 | C→A | 9.5% | G66G (GGG→GGT) | yicJ ← | putative transporter |
| RA | 3,842,418 | C→T | 9.2% | R360H (CGT→CAT) | uhpB ← | sensory histidine kinase in two‑component regulatory sytem with UhpA |
| RA | 3,847,845 | G→T | 10.8% | P188P (CCG→CCT) | emrD → | multidrug efflux system protein |
| RA | 3,857,977 | C→T | 11.1% | G553S (GGT→AGT) | yidE ← | putative transporter |
| RA | 3,907,709 | C→A | 8.3% | V284V (GTG→GTT) | glmU ← | fused N‑acetyl glucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyl transferase |
| RA | 3,918,952 | C→A | 12.4% | G14G (GGG→GGT) | mnmG ← | 5‑methylaminomethyl‑2‑thiouridine modification at tRNA U34 |
| RA | 3,934,589 | G→T | 7.8% | P33P (CCC→CCA) | yieP ← | putative transcriptional regulator |
| RA | 3,945,584 | A→T | 5.1% | V8V (GTA→GTT) | ilvM → | acetolactate synthase 2 small subunit |
| RA | 3,953,560 | C→A | 12.0% | pseudogene (55/243 nt) | yifN ← | PemK toxin family pseudogene |
| RA | 3,953,753 | C→A | 10.9% | pseudogene (68/207 nt) | yifN ← | PemK toxin family pseudogene |
| RA | 3,953,903 | G→T | 8.6% | intergenic (‑83/‑134) | yifN ← / → rep | PemK toxin family pseudogene/DNA helicase and single‑stranded DNA‑dependent ATPase |
| RA | 3,959,579 | G→T | 9.3% | intergenic (+129/‑198) | trxA → / → rho | thioredoxin 1/transcription termination factor |
| RA | 3,968,340 | G→T | 15.4% | G172C (GGT→TGT) | wecD → | TDP‑fucosamine acetyltransferase |
| RA | 3,968,842 | G→T | 10.2% | E113* (GAA→TAA) | wecE → | TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase |
| RA | 3,978,190 | C→A | 13.4% | G393V (GGG→GTG) | aslA ← | putative Ser‑type periplasmic non‑aryl sulfatase |
| RA | 4,013,404 | G→T | 8.3% | G141* (GGA→TGA) noncoding (67/252 nt) |
ubiJ → esrE → |
aerobic ubiquinone synthesis protein, SCP2 family protein essential sRNA of unknown function |
| RA | 4,015,820 | G→T | 19.0% | S81S (TCG→TCT) | tatB → | TatABCE protein translocation system subunit |
| RA | 4,025,355 | G→T | 10.0% | D279Y (GAT→TAT) | pepQ → | proline dipeptidase |
| RA | 4,040,539 | G→T | 9.5% | E72* (GAA→TAA) | polA → | fused DNA polymerase I 5'‑>3' polymerase/3'‑>5' exonuclease/5'‑>3' exonuclease |
| RA | 4,040,952 | C→T | 6.2% | G209G (GGC→GGT) | polA → | fused DNA polymerase I 5'‑>3' polymerase/3'‑>5' exonuclease/5'‑>3' exonuclease |
| RA | 4,041,601 | G→T | 11.4% | G426C (GGT→TGT) | polA → | fused DNA polymerase I 5'‑>3' polymerase/3'‑>5' exonuclease/5'‑>3' exonuclease |
| RA | 4,043,938 | T→C | 16.7% | Q63R (CAG→CGG) | yihA ← | cell division GTP‑binding protein |
| RA | 4,043,940 | G→C | 16.7% | T62T (ACC→ACG) ‡ | yihA ← | cell division GTP‑binding protein |
| RA | 4,043,942 | T→C | 16.7% | T62A (ACC→GCC) ‡ | yihA ← | cell division GTP‑binding protein |
| RA | 4,049,437 | C→A | 11.1% | R88L (CGC→CTC) | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,049,604 | G→T | 10.0% | A32A (GCC→GCA) | glnL ← | sensory histidine kinase in two‑component regulatory system with GlnG |
| RA | 4,066,998 | G→T | 12.1% | intergenic (‑67/‑101) | yihU ← / → yihV | gamma‑hydroxybutyrate dehydrogenase, NADH‑dependent/putative sugar kinase |
| RA | 4,080,626 | C→T | 10.5% | Q89* (CAG→TAG) | yiiG → | DUF3829 family lipoprotein |
| RA | 4,092,969 | G→T | 12.9% | E74* (GAA→TAA) | yiiM → | 6‑N‑hydroxylaminopurine resistance protein |
| RA | 4,098,277 | C→A | 14.3% | S266S (TCC→TCA) | pfkA → | 6‑phosphofructokinase I |
| RA | 4,105,477 | G→T | 9.2% | R11S (CGC→AGC) | glpX ← | fructose 1,6‑bisphosphatase II |
| RA | 4,107,253 | C→A | 12.9% | G256C (GGT→TGT) | glpF ← | glycerol facilitator |
| RA | 4,142,330 | C→A | 10.2% | G233C (GGC→TGC) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,148,466 | C→A | 13.0% | H17N (CAT→AAT) | oxyR → | oxidative and nitrosative stress transcriptional regulator |
| RA | 4,173,725 | C→A | 11.1% | T851T (ACC→ACA) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,173,912 | A→G | 32.1% | K914E (AAA→GAA) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,175,105 | C→A | 12.7% | G1311G (GGC→GGA) | rpoB → | RNA polymerase, beta subunit |
| JC | 4,176,463 | Δ12 bp | 24.6% | coding (1186‑1197/4224 nt) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,181,712 | C→A | 12.9% | E29* (GAG→TAG) | thiH ← | tyrosine lyase, involved in thiamine‑thiazole moiety synthesis |
| RA | 4,182,811 | G→T | 20.0% | L232M (CTG→ATG) | thiF ← | adenylyltransferase, modifies ThiS C‑terminus |
| RA | 4,187,151 | G→T | 12.1% | P107P (CCG→CCT) | nudC → | NADH pyrophosphatase |
| RA | 4,199,631 | T→A | 7.3% | intergenic (+15/‑71) | rrsE → / → gltV | 16S ribosomal RNA of rrnE operon/tRNA‑Glu |
| RA | 4,204,744 | G→A | 15.7% | L179L (CTG→CTA) | metA → | homoserine O‑transsuccinylase |
| RA | 4,228,420 | C→A | 11.7% | R287S (CGC→AGC) | yjbH → | DUF940 family extracellular polysaccharide protein |
| RA | 4,228,424 | C→A | 11.8% | P288Q (CCG→CAG) | yjbH → | DUF940 family extracellular polysaccharide protein |
| RA | 4,242,755 | C→T | 10.2% | Q108* (CAA→TAA) | ubiC → | chorismate‑‑pyruvate lyase |
| RA | 4,255,401 | G→A | 16.7% | R387H (CGT→CAT) | dnaB → | replicative DNA helicase |
| RA | 4,260,208 | G→T | 13.4% | G15W (GGG→TGG) | yjbQ → | thiamine phosphate synthase |
| RA | 4,260,652 | G→T | 15.5% | D23Y (GAC→TAC) | yjbR → | DUF419 family protein |
| RA | 4,267,526 | G→T | 11.8% | G44C (GGC→TGC) | soxR → | redox‑sensitive transcriptional activator of soxS; autorepressor |
| RA | 4,275,752 | C→A | 12.0% | V516V (GTG→GTT) | acs ← | acetyl‑CoA synthetase |
| RA | 4,285,970 | C→T | 11.8% | intergenic (+248/+283) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,295,685 | C→A | 11.8% | G244C (GGC→TGC) | yjcS ← | metallo‑beta‑lactamase superfamily protein |
| RA | 4,303,456 | G→A | 7.3% | R97Q (CGG→CAG) | rpiB → | ribose 5‑phosphate isomerase B/allose 6‑phosphate isomerase |
| RA | 4,312,823 | G→T | 18.6% | pseudogene (225/426 nt) | phnE ← | defective phosphonate ABC transporter permease;transport; Transport of small molecules: Anions; membrane channel protein component of Pn transporter; membrane component of ABC superfamily |
| RA | 4,315,313 | G→T | 27.6% | A82A (GCC→GCA) | yjdN ← | metalloprotein superfamily protein |
| RA | 4,315,802 | Δ1 bp | 8.7% | intergenic (‑244/+414) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,315,803 | Δ1 bp | 8.7% | intergenic (‑245/+413) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,315,804 | Δ1 bp | 8.7% | intergenic (‑246/+412) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,315,809 | G→C | 9.8% | intergenic (‑251/+407) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,315,812 | G→A | 10.1% | intergenic (‑254/+404) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,315,813 | G→C | 10.0% | intergenic (‑255/+403) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,315,814 | A→T | 10.0% | intergenic (‑256/+402) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,332,842 | G→A | 8.5% | G372D (GGC→GAC) | melA → | alpha‑galactosidase, NAD(P)‑binding |
| RA | 4,335,675 | G→A | 8.6% | A490V (GCG→GTG) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,347,217 | C→A | 11.9% | V406V (GTG→GTT) | cadA ← | lysine decarboxylase, acid‑inducible |
| RA | 4,349,974 | A→G | 14.3% | intergenic (‑126/+239) | cadB ← / ← cadC | putative lysine/cadaverine transporter/cadBA operon transcriptional activator |
| RA | 4,357,840 | G→A | 10.2% | A102V (GCA→GTA) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,364,443 | C→A | 12.9% | intergenic (‑392/+3) | yjeJ ← / ← epmB | uncharacterized protein/EF‑P‑Lys34 lysylation protein; weak lysine 2,3‑aminomutase |
| RA | 4,373,241 | G→A | 6.8% | R261H (CGC→CAC) | epmA → | Elongation Factor P Lys34 lysyltransferase |
| RA | 4,389,132 | G→T | 12.4% | G22C (GGT→TGT) | miaA → | delta(2)‑isopentenylpyrophosphate tRNA‑adenosine transferase |
| RA | 4,402,089 | C→A | 18.1% | P98P (CCC→CCA) | yjfL → | UPF0719 family inner membrane protein |
| RA | 4,403,223 | G→T | 9.7% | E127* (GAG→TAG) | yjfC → | ATP‑Grasp family ATPase |
| RA | 4,407,991 | C→A | 10.7% | G94C (GGC→TGC) | ulaR ← | transcriptional repressor for the L‑ascorbate utilization (ula) divergent operon |
| RA | 4,434,178 | G→T | 7.7% | E84* (GAG→TAG) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,436,074 | C→T | 10.3% | P716S (CCG→TCG) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,448,190 | G→T | 10.3% | E139* (GAA→TAA) | pmbA → | putative antibiotic peptide MccB17 maturation peptidase |
| RA | 4,448,560 | G→T | 19.2% | G262V (GGG→GTG) | pmbA → | putative antibiotic peptide MccB17 maturation peptidase |
| RA | 4,457,711 | G→T | 14.9% | W90C (TGG→TGT) | mgtA → | magnesium transporter |
| RA | 4,465,143 | C→A | 14.8% | intergenic (+12/‑111) | tabA → / → yjgL | biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily/uncharacterized protein |
| RA | 4,471,419 | G→T | 7.1% | L746M (CTG→ATG) | valS ← | valyl‑tRNA synthetase |
| RA | 4,478,782 | C→A | 8.5% | D367Y (GAT→TAT) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,501,052 | C→A | 13.0% | A75S (GCC→TCC) | fecE ← | iron‑dicitrate transporter subunit |
| RA | 4,516,911 | G→T | 9.3% | P148P (CCC→CCA) | sgcE ← | putative epimerase |
| RA | 4,527,256 | G→T | 5.6% | P52P (CCC→CCA) | nanS ← | 9‑O‑acetyl N‑acetylneuraminic acid esterase |
| RA | 4,535,701 | G→T | 10.2% | L263L (CTG→CTT) | fimD → | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| RA | 4,584,102 | C→T | 7.0% | P146P (CCG→CCA) | yjjL ← | L‑galactonate transporter |
| RA | 4,586,184 | G→T | 10.0% | V126V (GTG→GTT) | yjjN → | L‑galactonate oxidoreductase |
| RA | 4,587,055 | G→T | 10.0% | S735* (TCA→TAA) | opgB ← | phosphoglycerol transferases I and II |
| RA | 4,590,470 | G→T | 13.3% | P108Q (CCA→CAA) | dnaC ← | DNA biosynthesis protein |
| RA | 4,595,984 | C→T | 16.7% | intergenic (‑2/+33) | leuV ← / ← leuP | tRNA‑Leu/tRNA‑Leu |
| RA | 4,595,985 | A→T | 16.7% | intergenic (‑3/+32) | leuV ← / ← leuP | tRNA‑Leu/tRNA‑Leu |
| RA | 4,608,508 | G→T | 11.1% | G155C (GGT→TGT) | deoA → | thymidine phosphorylase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 80521 | 80608 | 88 | 4 [3] | [2] 4 | leuL/leuO | leu operon leader peptide/global transcription factor |
| * | * | ÷ | CP009273 | 578893 | 579140 | 248 | 4 [2] | [3] 4 | [appY] | [appY] |
| * | * | ÷ | CP009273 | 1524234 | 1524403 | 170 | 4 [3] | [2] 6 | ydcD | uncharacterized protein |
| * | * | ÷ | CP009273 | 2027310 | 2027398 | 89 | 4 [0] | [3] 4 | rseX/yedS | sRNA antisense regulator of ompA and ompC translation, Hfq‑dependent/pseudogene, outer membrane protein homology; putative outer membrane protein |
| * | * | ÷ | CP009273 | 2462889 | 2463250 | 362 | 4 [2] | [3] 7 | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| * | * | ÷ | CP009273 | 2463655 | 2463930 | 276 | 4 [2] | [3] 4 | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| * | * | ÷ | CP009273 | 2988505 | 2988642 | 138 | 4 [2] | [2] 4 | ygeK/ygeN | pseudogene; putative 2‑component transcriptional regulator/pseudogene |
| * | * | ÷ | CP009273 | 3448799 | 3448878 | 80 | 4 [1] | [3] 7 | gspA/gspC | general secretory pathway component, cryptic/general secretory pathway component, cryptic |
| * | * | ÷ | CP009273 | 3463401 | 3463434 | 34 | 4 [1] | [2] 4 | chiA/tufA | periplasmic endochitinase/translation elongation factor EF‑Tu 1 |
| * | * | ÷ | CP009273 | 3787004 | 3787097 | 94 | 4 [2] | [3] 4 | [yibB] | [yibB] |
| * | * | ÷ | CP009273 | 3790379 | 3790514 | 136 | 7 [3] | [2] 4 | waaL | O‑antigen ligase |
| * | * | ÷ | CP009273 | 3792728 | 3792867 | 140 | 5 [3] | [2] 5 | waaZ | lipopolysaccharide core biosynthesis protein |
| * | * | ÷ | CP009273 | 3797644 | 3797763 | 120 | 4 [3] | [0] 4 | waaS | lipopolysaccharide core biosynthesis protein |
| * | * | ÷ | CP009273 | 4272648 | 4272677 | 30 | 4 [3] | [3] 4 | yjcF | pentapeptide repeats protein |
| * | * | ÷ | CP009273 | 4466964 | 4466977 | 14 | 6 [3] | [3] 6 | yjgL | uncharacterized protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 335467 | 25 (0.970) | 5 (0.210) | 3/168 | NT | 17.8% | intergenic (+13/‑409) | yahG/yahI | DUF1116 family protein/carbamate kinase‑like protein |
| ? | CP009273 | 4073380 = | NA (NA) | noncoding (1/98 nt) | REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP297 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | CP009273 | 360104 = | 39 (1.100) | 30 (0.850) | 19/250 | NT | 43.5% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 370385 | 38 (1.480) | 5 (0.220) | 5/164 | NT | 12.8% | intergenic (+48/‑530) | mhpE/mhpT | 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter |
| ? | CP009273 | = 372977 | NA (NA) | noncoding (187/187 nt) | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences | |||||
| * | ? | CP009273 | 370386 = | NA (NA) | 3 (0.120) | 3/180 | NT | 8.4% | noncoding (1/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | = 694880 | 33 (1.280) | intergenic (‑247/+150) | asnB/umpH | asparagine synthetase B/UMP phosphatase | |||||
| * | ? | CP009273 | = 372981 | NA (NA) | 5 (0.150) | 4/242 | NT | NA | intergenic (+214/+10) | yaiL/frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| ? | CP009273 | = 4316163 | NA (NA) | noncoding (545/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | CP009273 | 1203246 = | 13 (0.370) | 16 (0.520) | 11/218 | NT | 60.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 10 (0.320) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 13 (0.370) | 11 (0.360) | 8/218 | NT | 50.8% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 10 (0.320) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||