mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 17,673 | G→T | 19.8% | W62L (TGG→TTG) | nhaA → | sodium‑proton antiporter |
| RA | 18,787 | G→T | 9.3% | G25C (GGC→TGC) | nhaR → | transcriptional activator of nhaA |
| RA | 49,981 | G→T | 8.6% | P53P (CCG→CCT) | folA → | dihydrofolate reductase |
| RA | 141,158 | C→A | 8.2% | A32D (GCC→GAC) | yadI → | putative PTS Enzyme IIA |
| RA | 169,472 | G→T | 14.0% | V508V (GTG→GTT) | fhuB → | fused iron‑hydroxamate transporter subunits of ABC superfamily: membrane components |
| RA | 210,646 | G→T | 8.4% | intergenic (‑34/‑132) | yaeP ← / → yaeQ | UPF0253 family protein/PDDEXK superfamily protein |
| RA | 216,968 | Δ1 bp | 11.1% | coding (448/816 nt) | metQ ← | DL‑methionine transporter subunit |
| RA | 216,969 | Δ1 bp | 11.1% | coding (447/816 nt) | metQ ← | DL‑methionine transporter subunit |
| RA | 216,970 | Δ1 bp | 11.1% | coding (446/816 nt) | metQ ← | DL‑methionine transporter subunit |
| RA | 221,373:1 | +G | 8.0% | noncoding (1116/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,380 | T→A | 7.5% | noncoding (1123/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,390 | Δ1 bp | 7.8% | noncoding (1133/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,391 | G→A | 7.8% | noncoding (1134/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,393 | C→T | 7.8% | noncoding (1136/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,395 | G→A | 7.9% | noncoding (1138/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,397 | C→T | 7.9% | noncoding (1140/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,398 | C→T | 8.1% | noncoding (1141/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,402 | A→C | 8.4% | noncoding (1145/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,407 | A→T | 8.5% | noncoding (1150/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,412 | A→T | 8.4% | noncoding (1155/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,420 | A→G | 9.0% | noncoding (1163/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,425 | T→C | 15.6% | noncoding (1168/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,430 | T→C | 15.9% | noncoding (1173/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,455 | G→A | 20.0% | noncoding (1198/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,464 | G→C | 22.8% | noncoding (1207/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,471 | C→T | 23.8% | noncoding (1214/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 221,476 | A→T | 27.8% | noncoding (1219/1542 nt) | rrsH → | 16S ribosomal RNA of rrnH operon |
| RA | 237,957 | C→A | 6.5% | G612W (GGG→TGG) | fadE ← | acyl coenzyme A dehydrogenase |
| RA | 262,312 | G→T | 13.2% | pseudogene (174/222 nt) | ykfL ← | pseudogene, CP4‑6 putative prophage remnant;Phage or Prophage Related |
| RA | 262,318 | G→A | 10.4% | pseudogene (168/222 nt) | ykfL ← | pseudogene, CP4‑6 putative prophage remnant;Phage or Prophage Related |
| RA | 263,285 | G→A | 7.8% | D144D (GAC→GAT) | yafZ ← | CP4‑6 prophage; conserved protein |
| RA | 263,852 | T→A | 11.7% | T274S (ACG→TCG) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 263,855 | T→A | 11.5% | T273S (ACC→TCC) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 263,856 | G→A | 11.6% | R272R (CGC→CGT) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 263,871 | G→A | 9.9% | V267V (GTC→GTT) ‡ | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 263,873 | C→T | 10.0% | V267I (GTC→ATC) ‡ | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 263,876 | C→T | 10.4% | A266T (GCC→ACC) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein |
| RA | 274,938 | T→A | 9.5% | Q152L (CAG→CTG) | insB1 ← | IS1 transposase B |
| RA | 293,932 | C→A | 7.0% | G169V (GGC→GTC) | paoD ← | moco insertion factor for PaoABC aldehyde oxidoreductase |
| RA | 317,275 | G→T | 10.2% | intergenic (+483/‑44) | rclR → / → ykgE | reactive chlorine species (RCS)‑specific activator of the rcl genes/cysteine‑rich LutA family protein; putative electron transport chain YkgEFG component |
| RA | 356,558 | C→A | 9.6% | P286T (CCG→ACG) | cynX → | putative cyanate transporter |
| RA | 372,887:1 | +A | 11.5% | intergenic (+120/+104) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 372,888 | C→G | 10.2% | intergenic (+121/+103) | yaiL → / ← frmB | DUF2058 family protein/S‑formylglutathione hydrolase |
| RA | 392,187 | G→T | 10.5% | G31G (GGG→GGT) | sbmA → | microcin B17 transporter |
| RA | 392,604 | G→T | 7.8% | M170I (ATG→ATT) | sbmA → | microcin B17 transporter |
| RA | 405,300 | A→G | 7.4% | V59A (GTT→GCT) | rdgC ← | nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function |
| RA | 458,913 | G→T | 10.0% | G515C (GGT→TGT) | ppiD → | periplasmic folding chaperone, has an inactive PPIase domain |
| RA | 473,912 | C→A | 7.8% | K54N (AAG→AAT) | ylaB ← | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 479,431 | G→T | 16.0% | I143I (ATC→ATA) | acrB ← | multidrug efflux system protein |
| RA | 488,500 | G→A | 17.4% | R318H (CGC→CAC) | dnaX → | DNA polymerase III/DNA elongation factor III, tau and gamma subunits |
| RA | 491,877 | C→A | 10.5% | T434T (ACC→ACA) | htpG → | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase |
| RA | 511,328 | G→T | 10.0% | intergenic (‑99/‑47) | qmcA ← / → fetA | PHB domain membrane‑anchored putative protease/iron exporter, ATP‑binding subunit, ABC transporter FetAB subunit; peroxide resistance protein |
| RA | 521,092 | C→T | 5.8% | S792S (AGC→AGT) | rhsD → | Rhs family putative polymorphic toxin |
| RA | 543,418 | C→T | 10.2% | A428V (GCC→GTC) | fdrA → | putative NAD(P)‑binding acyl‑CoA synthetase |
| RA | 546,431 | G→T | 7.4% | V179V (GTG→GTT) | ybcF → | putative carbonate kinase |
| RA | 569,275 | T→A | 14.3% | D30E (GAT→GAA) | ylcG → | uncharacterized protein, DLP12 prophage |
| RA | 569,578 | G→T | 22.2% | C56F (TGC→TTC) | quuD → | DLP12 prophage; putative antitermination protein |
| RA | 573,883 | G→C | 8.1% | T107T (ACG→ACC) R34P (CGG→CCG) |
rzpD → rzoD → |
DLP12 prophage; putative murein endopeptidase DLP12 prophage; putative lipoprotein |
| RA | 577,301 | T→C | 9.0% | pseudogene (186/438 nt) | tfaD → | pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related |
| RA | 632,334 | G→T | 26.7% | V247V (GTC→GTA) | ybdO ← | putative DNA‑binding transcriptional regulator |
| RA | 639,119 | C→A | 14.6% | R102L (CGC→CTC) | rnk ← | regulator of nucleoside diphosphate kinase |
| RA | 645,155 | G→A | 10.5% | A264A (GCC→GCT) | citE ← | citrate lyase, citryl‑ACP lyase (beta) subunit |
| RA | 694,863 | A→T | 8.5% | intergenic (‑230/+167) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 694,871 | A→C | 12.5% | intergenic (‑238/+159) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 694,872 | T→G | 9.3% | intergenic (‑239/+158) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 703,862 | A→G | 9.7% | M25V (ATG→GTG) | chiP → | chitoporin, uptake of chitosugars |
| RA | 726,319 | G→C | 5.6% | A427A (GCG→GCC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 726,453 | G→A | 9.9% | S472N (AGC→AAC) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,171 | T→G | 6.9% | N711K (AAT→AAG) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,174 | C→T | 6.1% | G712G (GGC→GGT) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 727,989 | C→A | 8.0% | A984E (GCA→GAA) | rhsC → | Rhs family putative polymorphic toxin |
| RA | 732,955 | G→T | 8.2% | pseudogene (675/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| RA | 732,984 | T→C | 7.3% | pseudogene (704/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| RA | 733,018 | A→G | 5.3% | pseudogene (738/1137 nt) | ybfL → | pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein |
| RA | 786,409 | G→T | 11.7% | P26Q (CCG→CAG) | galT ← | galactose‑1‑phosphate uridylyltransferase |
| RA | 792,733 | C→T | 13.9% | H242Y (CAT→TAT) | modC → | molybdate transporter subunit |
| RA | 832,600 | C→A | 12.1% | P265H (CCC→CAC) | ybiC → | putative dehydrogenase |
| RA | 847,414 | G→A | 10.8% | P214S (CCG→TCG) | ybiP ← | putative EptAB family phosphoethanolamine transferase, inner membrane protein |
| RA | 851,338 | G→T | 9.3% | intergenic (‑138/‑81) | ldtB ← / → ybiT | L,D‑transpeptidase linking Lpp to murein/putative transporter subunit of ABC superfamily: ATP‑binding component |
| RA | 865,055 | C→T | 12.9% | F63F (TTC→TTT) | gsiB → | glutathione periplasmic binding protein, ABC superfamily transporter |
| RA | 868,177 | G→T | 10.0% | A278S (GCT→TCT) | gsiD → | glutathione transporter, permease component, ABC superfamily |
| RA | 913,047 | G→T | 9.9% | P373P (CCG→CCT) | ybjD → | putative OLD family ATP‑dependent endonuclease; DUF2813 family protein |
| RA | 928,185 | C→T | 7.8% | C45C (TGC→TGT) | lrp → | leucine‑responsive global transcriptional regulator |
| RA | 948,642 | G→A | 5.4% | C123C (TGC→TGT) | pflB ← | formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| RA | 952,720 | A→C | 14.2% | K168T (AAG→ACG) | ycaP → | UPF0702 family putative inner membrane protein |
| RA | 1,031,095 | G→A | 10.5% | G192S (GGC→AGC) | hyaC → | hydrogenase 1, b‑type cytochrome subunit |
| RA | 1,040,257 | C→A | 15.4% | E335* (GAA→TAA) | gfcE ← | putative O‑antigen capsule outer membrane auxillary protein export channel |
| RA | 1,045,283 | T→G | 10.6% | intergenic (‑83/‑6) | gfcA ← / → insA | O‑antigen capsule production threonine‑rich inner membrane protein/IS1 repressor TnpA |
| RA | 1,066,607 | G→T | 10.8% | C205* (TGC→TGA) | rutD ← | putative aminoacrylate hydrolase, reactive intermediate detoxification |
| RA | 1,095,815 | G→T | 5.4% | A22S (GCT→TCT) | ycdZ → | DUF1097 family inner membrane protein |
| RA | 1,112,507 | A→T | 37.1% | Q82L (CAG→CTG) | yceA → | putative rhodanese‑related sulfurtransferase |
| RA | 1,252,353 | C→T | 11.1% | G306S (GGC→AGC) | ychF ← | catalase inhibitor protein; ATPase, K+‑dependent, ribosome‑associated |
| RA | 1,282,249 | A→G | 15.6% | intergenic (+267/+273) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,421 | A→G | 8.5% | intergenic (+439/+101) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,430 | C→T | 6.8% | intergenic (+448/+92) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,439 | A→G | 8.2% | intergenic (+457/+83) | narI → / ← rttR | nitrate reductase 1, gamma (cytochrome b(NR)) subunit/rtT sRNA, processed from tyrT transcript |
| RA | 1,282,599 | G→A | 5.9% | noncoding (94/171 nt) P12S (CCA→TCA) |
rttR ← tpr ← |
rtT sRNA, processed from tyrT transcript protamine‑like protein |
| RA | 1,284,941 | G→T | 16.0% | G81C (GGT→TGT) | rssA → | putative patatin‑like family phospholipase |
| RA | 1,331,482 | C→A | 9.5% | V465V (GTC→GTA) | acnA → | aconitate hydratase 1 |
| RA | 1,374,549 | C→A | 17.4% | R49S (CGC→AGC) | ycjU → | beta‑phosphoglucomutase |
| RA | 1,422,060 | G→C | 6.6% | pseudogene (924/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,132 | C→T | 7.7% | pseudogene (852/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,150 | C→T | 5.2% | pseudogene (834/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,252 | A→G | 6.8% | pseudogene (732/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,648 | G→C | 5.2% | pseudogene (336/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,744 | G→A | 7.9% | pseudogene (240/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,756 | G→C | 5.0% | pseudogene (228/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,759 | A→G | 5.0% | pseudogene (225/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,762 | G→A | 5.0% | pseudogene (222/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,422,957 | A→G | 6.1% | pseudogene (27/981 nt) | insH1 ← | IS5 transposase and trans‑activator;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 1,426,820 | G→A | 22.2% | P51P (CCG→CCA) | tfaR → | Rac prophage; putative tail fiber assembly protein |
| RA | 1,450,389 | C→A | 9.5% | R70S (CGT→AGT) | paaD → | ring 1,2‑phenylacetyl‑CoA epoxidase subunit |
| RA | 1,460,689 | A→G | 9.2% | pseudogene (1041/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,497,218 | G→A | 11.8% | E169K (GAG→AAG) | ydcL → | lipoprotein |
| RA | 1,526,201 | C→T | 9.1% | G43G (GGC→GGT) | ydcC → | H repeat‑associated putative transposase |
| RA | 1,558,535 | C→A | 11.8% | D486Y (GAT→TAT) | dosP ← | oxygen sensor, c‑di‑GMP phosphodiesterase, heme‑regulated; cold‑ and stationary phase‑induced bioflim regulator |
| RA | 1,584,947 | G→T | 9.4% | intergenic (‑154/+164) | yneL ← / ← hipA | pseudogene, AraC family/inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
| RA | 1,593,201 | C→A | 11.4% | S422S (TCG→TCT) | lsrK ← | autoinducer‑2 (AI‑2) kinase |
| RA | 1,607,385 | C→A | 10.8% | G42W (GGG→TGG) | glsB ← | glutaminase 2 |
| RA | 1,610,565 | G→A | 10.9% | S182S (TCG→TCA) | yneK → | uncharacterized protein |
| RA | 1,628,897 | G→C | 10.2% | G82G (GGC→GGG) | tfaQ ← | Qin prophage; putative tail fiber assembly protein |
| RA | 1,628,900 | G→T | 10.2% | S81S (TCC→TCA) | tfaQ ← | Qin prophage; putative tail fiber assembly protein |
| RA | 1,628,903 | A→C | 10.0% | A80A (GCT→GCG) | tfaQ ← | Qin prophage; putative tail fiber assembly protein |
| RA | 1,628,906 | C→T | 10.1% | V79V (GTG→GTA) | tfaQ ← | Qin prophage; putative tail fiber assembly protein |
| RA | 1,643,508 | G→T | 22.7% | intergenic (+210/‑131) | ydfC → / → dicF | uncharacterized protein, Qin prophage/sRNA antisense regulator, inhibits ftsZ, Hfq‑dependent; Qin prophage |
| RA | 1,675,131 | G→T | 12.2% | E440* (GAA→TAA) | ydgI → | putative arginine/ornithine antiporter transporter |
| RA | 1,703,236 | C→T | 13.8% | V687V (GTC→GTT) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,242 | G→A | 14.7% | A689A (GCG→GCA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,248 | T→C | 15.0% | I691I (ATT→ATC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,251 | A→C | 15.6% | A692A (GCA→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,703,263 | A→G | 14.4% | A696A (GCA→GCG) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| RA | 1,724,769 | G→T | 14.3% | A476S (GCA→TCA) | lhr → | putative ATP‑dependent helicase |
| RA | 1,735,109 | C→A | 11.8% | Y314* (TAC→TAA) | ydhC → | putative arabinose efflux transporter |
| RA | 1,736,203 | G→T | 23.5% | W178C (TGG→TGT) | cfa → | cyclopropane fatty acyl phospholipid synthase (unsaturated‑phospholipid methyltransferase) |
| RA | 1,748,408 | G→T | 10.0% | G109G (GGC→GGA) | ydhY ← | putative 4Fe‑4S ferridoxin‑type protein; FNR, Nar, NarP‑regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex |
| RA | 1,749,771 | C→T | 11.9% | intergenic (‑373/‑184) | ydhZ ← / → pykF | uncharacterized protein/pyruvate kinase I |
| RA | 1,754,778 | C→A | 18.3% | M1M (ATG→ATT) † *424L (TGA→TTA) |
sufS ← sufD ← |
cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP‑dependent component of SufBCD Fe‑S cluster assembly scaffold |
| RA | 1,775,148 | C→A | 10.0% | T164K (ACA→AAA) | ydiR → | putative electron transfer flavoprotein, FAD‑binding subunit |
| RA | 1,794,482 | C→T | 12.2% | Q138Q (CAG→CAA) | infC ← | translation initiation factor IF‑3 |
| RA | 1,810,480 | C→T | 12.2% | intergenic (+95/+163) | katE → / ← chbG | catalase HPII, heme d‑containing/chito‑oligosaccharide deacetylase |
| RA | 1,810,481 | T→C | 11.2% | intergenic (+96/+162) | katE → / ← chbG | catalase HPII, heme d‑containing/chito‑oligosaccharide deacetylase |
| RA | 1,810,486 | A→T | 10.8% | intergenic (+101/+157) | katE → / ← chbG | catalase HPII, heme d‑containing/chito‑oligosaccharide deacetylase |
| RA | 1,810,496 | T→G | 12.2% | intergenic (+111/+147) | katE → / ← chbG | catalase HPII, heme d‑containing/chito‑oligosaccharide deacetylase |
| RA | 1,861,011 | T→C | 11.8% | intergenic (‑282/‑154) | mipA ← / → yeaG | scaffolding protein for murein synthesizing machinery/protein kinase, endogenous substrate unidentified; autokinase |
| RA | 1,909,075 | C→T | 14.3% | intergenic (‑2/+18) | prc ← / ← proQ | carboxy‑terminal protease for penicillin‑binding protein 3/RNA chaperone, putative ProP translation regulator |
| RA | 1,910,770 | G→T | 27.2% | E86* (GAA→TAA) | yebS → | inner membrane protein |
| RA | 1,947,767 | G→T | 33.3% | L23L (CTG→CTT) | cmoB → | tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent |
| RA | 1,979,001 | C→A | 12.1% | P203P (CCG→CCT) | araF ← | L‑arabinose transporter subunit |
| RA | 2,014,379 | G→T | 12.1% | R271L (CGC→CTC) | fliM → | flagellar motor switching and energizing component |
| RA | 2,041,148 | Δ1 bp | 6.0% | coding (2730/7077 nt) | yeeJ → | putative adhesin |
| RA | 2,041,529 | G→T | 19.1% | A1037A (GCG→GCT) | yeeJ → | putative adhesin |
| RA | 2,066,701 | C→A | 14.8% | A561D (GCC→GAC) | flu → | CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,085,564 | C→A | 15.4% | I329I (ATC→ATA) | hisD → | bifunctional histidinal dehydrogenase/ histidinol dehydrogenase |
| RA | 2,142,070 | G→T | 8.9% | G306C (GGT→TGT) | yegD → | Hsp70 chaperone family protein |
| RA | 2,201,725:1 | +C | 7.8% | coding (280/1137 nt) | yehP → | VMA domain putative YehL ATPase stimulator |
| RA | 2,201,725:2 | +A | 7.8% | coding (280/1137 nt) | yehP → | VMA domain putative YehL ATPase stimulator |
| RA | 2,216,086 | G→T | 9.1% | V141V (GTG→GTT) | dld → | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| RA | 2,226,252 | C→A | 12.1% | intergenic (+45/‑105) | cdd → / → sanA | cytidine/deoxycytidine deaminase/vancomycin high temperature exclusion protein, DUF218 superfamily protein |
| RA | 2,274,636 | G→T | 14.8% | A176S (GCC→TCC) | yejH → | putative ATP‑dependent DNA or RNA helicase |
| RA | 2,328,265 | C→T | 5.9% | L58L (CTG→CTA) | yfaT ← | DUF1175 family protein, putative host defense protein |
| RA | 2,375,355 | C→A | 10.3% | T90K (ACG→AAG) | rbn → | RNase BN, tRNA processing enzyme |
| RA | 2,405,447 | G→T | 10.3% | A41D (GCT→GAT) | yfbT ← | sugar phosphatas |
| RA | 2,409,887 | C→A | 11.5% | D554E (GAC→GAA) | pta → | phosphate acetyltransferase |
| RA | 2,433,444 | C→A | 10.5% | M52I (ATG→ATT) | yfcJ ← | putative arabinose efflux transporter |
| RA | 2,458,412 | C→T | 7.4% | Q25Q (CAG→CAA) | mlaA ← | ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component |
| RA | 2,504,418 | T→C | 10.6% | intergenic (+53/‑62) | yfeO → / → ypeC | putative ion channel protein/DUF2502 family putative periplasmic protein |
| RA | 2,504,420 | C→G | 10.3% | intergenic (+55/‑60) | yfeO → / → ypeC | putative ion channel protein/DUF2502 family putative periplasmic protein |
| RA | 2,504,422 | T→G | 10.5% | intergenic (+57/‑58) | yfeO → / → ypeC | putative ion channel protein/DUF2502 family putative periplasmic protein |
| RA | 2,510,465 | G→A | 7.4% | Q283* (CAA→TAA) | yfeA ← | putative diguanylate cyclase |
| RA | 2,515,234 | C→A | 8.5% | M201I (ATG→ATT) | xapR ← | transcriptional activator of xapAB |
| RA | 2,516,885 | G→T | 15.4% | H154N (CAT→AAT) | xapB ← | xanthosine transporter |
| RA | 2,525,552 | G→T | 12.1% | C244F (TGC→TTC) | cysZ → | EI24 family inner membrane protein; putative sulfate transporter |
| RA | 2,591,752 | C→T | 12.5% | R158H (CGT→CAT) | bamC ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,619,717 | C→A | 14.8% | A415E (GCG→GAG) | ppx → | exopolyphosphatase |
| RA | 2,625,889 | C→A | 8.2% | T2T (ACG→ACT) | guaA ← | GMP synthetase (glutamine aminotransferase) |
| RA | 2,636,690 | G→A | 7.1% | P318L (CCG→CTG) | rlmN ← | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM‑dependent |
| RA | 2,638,476 | G→T | 17.4% | R737S (CGC→AGC) | pbpC ← | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| RA | 2,649,844 | G→A | 25.0% | intergenic (‑127/+51) | pepB ← / ← iscX | aminopeptidase B/Iron binding protein associated with IscS; putative molecular adaptor of IscS function |
| RA | 2,650,675 | C→A | 14.9% | L540L (CTG→CTT) | hscA ← | DnaK‑like molecular chaperone specific for IscU |
| RA | 2,691,032 | G→T | 8.7% | A62D (GCC→GAC) | tadA ← | tRNA‑specific adenosine deaminase |
| RA | 2,692,360 | C→A | 10.8% | P81P (CCC→CCA) | yfhH → | putative DNA‑binding transcriptional regulator |
| RA | 2,707,696 | G→A | 6.9% | intergenic (+107/+102) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,707,700 | G→A | 7.0% | intergenic (+111/+98) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,707,703 | C→T | 8.8% | intergenic (+114/+95) | srmB → / ← yfiE | ATP‑dependent RNA helicase/putative DNA‑binding transcriptional regulator |
| RA | 2,719,536 | G→T | 26.4% | noncoding (12/120 nt) | rrfG ← | 5S ribosomal RNA of rrnG operon |
| RA | 2,725,220 | A→G | 17.4% | I771I (ATT→ATC) | clpB ← | protein disaggregation chaperone |
| RA | 2,761,401 | A→G | 13.6% | Q111Q (CAA→CAG) | yfjP → | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,761,407 | C→T | 12.5% | P113P (CCC→CCT) | yfjP → | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,761,410 | G→C | 12.5% | R114R (CGG→CGC) | yfjP → | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein |
| RA | 2,809,576 | C→T | 15.1% | D75N (GAT→AAT) | gshA ← | glutamate‑cysteine ligase |
| RA | 2,855,112 | G→T | 6.2% | A108A (GCG→GCT) | ygbJ → | putative dehydrogenase |
| RA | 2,878,397 | G→T | 13.6% | R728R (CGG→AGG) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| RA | 2,892,047 | C→T | 5.7% | G244D (GGC→GAC) | ygcU ← | putative FAD‑containing dehydrogenase |
| RA | 2,941,193 | G→T | 15.9% | Q393K (CAG→AAG) | amiC ← | N‑acetylmuramoyl‑L‑alanine amidase |
| RA | 2,955,920 | G→A | 11.3% | N68N (AAC→AAT) ‡ | ppdC ← | putative prepilin peptidase‑dependent protein |
| RA | 2,955,921 | T→C | 11.3% | N68S (AAC→AGC) ‡ | ppdC ← | putative prepilin peptidase‑dependent protein |
| RA | 2,955,926:1 | +G | 11.3% | coding (198/324 nt) | ppdC ← | putative prepilin peptidase‑dependent protein |
| RA | 2,964,345 | G→T | 16.7% | A189A (GCG→GCT) | ygdQ → | UPF0053 family inner membrane protein |
| RA | 2,992,511 | C→A | 5.9% | S247I (AGC→ATC) | ygeR ← | LysM domain‑containing M23 family putative peptidase; septation lipoprotein |
| RA | 3,012,924 | G→T | 12.5% | S135S (TCG→TCT) | ssnA → | putative chlorohydrolase/aminohydrolase |
| RA | 3,013,960 | A→G | 6.6% | Y21C (TAC→TGC) | ygfM → | putative oxidoreductase |
| RA | 3,017,494 | C→A | 20.6% | R940R (CGC→CGA) | xdhD → | putative hypoxanthine oxidase, molybdopterin‑binding/Fe‑S binding |
| RA | 3,083,407 | G→T | 8.3% | E98D (GAG→GAT) | yggI → | Zn‑dependent metalloprotease‑related protein |
| RA | 3,091,681 | C→A | 19.3% | T352T (ACC→ACA) | yggW → | HemN family putative oxidoreductase |
| RA | 3,096,521 | C→A | 8.2% | P50P (CCC→CCA) | mutY → | adenine DNA glycosylase |
| RA | 3,102,112 | C→A | 6.9% | G135* (GGA→TGA) | speC ← | ornithine decarboxylase, constitutive |
| RA | 3,126,947 | C→A | 11.5% | D124Y (GAC→TAC) | yghS ← | putative ATP‑binding protein |
| RA | 3,128,932 | C→T | 9.7% | V267I (GTT→ATT) | pitB ← | phosphate transporter |
| RA | 3,136,579 | G→A | 6.7% | F315F (TTC→TTT) | hybB ← | putative hydrogenase 2 cytochrome b type component |
| RA | 3,173,666 | G→A | 9.1% | P188P (CCG→CCA) | ygiB → | DUF1190 family protein |
| RA | 3,184,204 | G→T | 7.9% | G72C (GGC→TGC) | yqiI → | fimbrial protein |
| RA | 3,187,945 | G→A | 14.3% | intergenic (+61/+137) | yqiK → / ← sibD | PHB family membrane protein, function unknown/sRNA antisense regulator of toxic IbsD protein |
| RA | 3,236,263 | C→A | 8.7% | A137A (GCG→GCT) | uxaA ← | altronate hydrolase |
| RA | 3,267,151 | A→G | 11.1% | S372S (TCT→TCC) | garP ← | putative (D)‑galactarate transporter |
| RA | 3,290,110 | C→A | 12.1% | Q115K (CAG→AAG) | yraP → | outer membrane lipoprotein |
| RA | 3,368,659 | C→A | 22.2% | T144T (ACC→ACA) | dcuD → | putative transporter |
| RA | 3,408,568 | T→C | 9.1% | D59D (GAT→GAC) | acrF → | multidrug efflux system protein |
| RA | 3,408,577 | G→A | 11.8% | T62T (ACG→ACA) | acrF → | multidrug efflux system protein |
| RA | 3,416,899 | A→G | 14.8% | noncoding (3/120 nt) | rrfF ← | 5S ribosomal RNA of rrnD operon |
| RA | 3,420,206 | G→A | 11.9% | intergenic (‑64/+111) | rrlD ← / ← alaU | 23S ribosomal RNA of rrnD operon/tRNA‑Ala |
| RA | 3,421,849 | T→A | 11.0% | noncoding (273/1542 nt) | rrsD ← | 16S ribosomal RNA of rrnD operon |
| RA | 3,464,590 | G→A | 7.4% | T33T (ACC→ACT) | tufA ← | translation elongation factor EF‑Tu 1 |
| RA | 3,474,724 | C→A | 9.1% | P26H (CCT→CAT) | yheS → | putative transporter subunit of ABC superfamily: ATP‑binding component |
| RA | 3,480,804 | C→T | 13.3% | H219Y (CAT→TAT) | yhfK → | putative transporter, FUSC superfamily inner membrane protein, tandem domains |
| RA | 3,543,152 | G→T | 10.8% | T93K (ACG→AAG) | malQ ← | 4‑alpha‑glucanotransferase (amylomaltase) |
| RA | 3,554,484 | G→T | 12.1% | A110D (GCC→GAC) | glpG ← | rhomboid intramembrane serine protease |
| RA | 3,581,907 | C→A | 13.6% | V212F (GTT→TTT) | ugpC ← | glycerol‑3‑phosphate transporter subunit |
| RA | 3,612,677 | A→G | 17.4% | G42G (GGA→GGG) | rhsB → | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| RA | 3,617,887 | T→C | 7.7% | F50F (TTT→TTC) | yhhI → | putative transposase |
| RA | 3,628,084 | C→T | 28.6% | intergenic (‑266/‑117) | yhiL ← / → yhiM | pseudogene, DUF4049 family protein/acid resistance protein, inner membrane |
| RA | 3,632,609 | A→C | 11.8% | intergenic (+108/+136) | pitA → / ← uspB | phosphate transporter, low‑affinity; tellurite importer/universal stress (ethanol tolerance) protein B |
| RA | 3,633,367 | G→T | 12.5% | intergenic (‑287/‑104) | uspB ← / → uspA | universal stress (ethanol tolerance) protein B/universal stress global response regulator |
| RA | 3,686,493 | C→A | 8.9% | E702* (GAG→TAG) | bcsA ← | cellulose synthase, catalytic subunit |
| RA | 3,799,878 | C→A | 6.5% | E184* (GAA→TAA) | waaG ← | glucosyltransferase I |
| RA | 3,881,049 | C→A | 15.4% | R288S (CGC→AGC) | mnmE → | tRNA U34 5‑methylaminomethyl‑2‑thiouridine modification GTPase |
| RA | 3,903,416 | C→T | 9.7% | A115T (GCC→ACC) | pstC ← | phosphate transporter subunit |
| RA | 3,914,452 | C→A | 9.3% | G33V (GGT→GTT) | atpE ← | F0 sector of membrane‑bound ATP synthase, subunit c |
| RA | 3,956,966 | G→T | 10.1% | C208* (TGC→TGA) | gpp ← | guanosine pentaphosphatase/exopolyphosphatase |
| RA | 3,970,239 | C→A | 10.6% | P201Q (CCG→CAG) | wzxE → | O‑antigen translocase |
| RA | 3,997,182 | A→G | 17.0% | I119I (ATT→ATC) ‡ | rarD ← | putative chloramphenical resistance permease |
| RA | 3,997,183 | A→T | 17.4% | I119N (ATT→AAT) ‡ | rarD ← | putative chloramphenical resistance permease |
| RA | 3,997,184 | T→G | 20.7% | I119L (ATT→CTT) ‡ | rarD ← | putative chloramphenical resistance permease |
| RA | 4,021,107 | A→G | 7.7% | G342G (GGT→GGC) | fadA ← | 3‑ketoacyl‑CoA thiolase (thiolase I) |
| RA | 4,043,994 | G→T | 14.5% | N44K (AAC→AAA) | yihA ← | cell division GTP‑binding protein |
| RA | 4,044,698 | C→A | 10.2% | intergenic (+58/‑9) | csrC → / → yihI | CsrC sRNA sequesters CsrA, a carbon flux regulator/activator of Der GTPase |
| RA | 4,053,474 | G→T | 6.6% | E570* (GAG→TAG) | typA → | GTP‑binding protein |
| RA | 4,062,048 | C→A | 9.9% | V197F (GTT→TTT) | yihQ ← | alpha‑glucosidase |
| RA | 4,091,237 | T→C | 8.7% | L167P (CTG→CCG) | sodA → | superoxide dismutase, Mn |
| RA | 4,103,974 | C→T | 9.7% | A143T (GCA→ACA) | fpr ← | ferredoxin‑NADP reductase |
| RA | 4,105,207 | G→T | 7.2% | L101M (CTG→ATG) | glpX ← | fructose 1,6‑bisphosphatase II |
| RA | 4,120,246 | G→T | 5.6% | A162S (GCC→TCC) | metL → | Bifunctional aspartokinase/homoserine dehydrogenase 2 |
| RA | 4,151,990 | C→A | 6.9% | L98I (CTC→ATC) | yijD → | DUF1422 family inner membrane protein |
| RA | 4,165,449 | C→T | 21.3% | noncoding (50/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,165,450 | A→C | 21.3% | noncoding (51/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,178,500 | C→T | 54.9% | R1075C (CGT→TGT) | rpoC → | RNA polymerase, beta prime subunit |
| RA | 4,184,351 | C→T | 12.9% | P559P (CCG→CCA) | thiC ← | phosphomethylpyrimidine synthase |
| RA | 4,216,666 | Δ1 bp | 11.1% | coding (2911/3684 nt) | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,216,669 | G→A | 10.2% | E972K (GAG→AAG) ‡ | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,216,670 | A→C | 11.8% | E972A (GAG→GCG) ‡ | metH → | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| RA | 4,249,947 | G→T | 15.2% | intergenic (‑16/‑302) | zur ← / → yjbL | transcriptional repressor, Zn(II)‑binding/uncharacterized protein |
| RA | 4,257,404 | A→G | 8.4% | E121E (GAA→GAG) | tyrB → | tyrosine aminotransferase, tyrosine‑repressible, PLP‑dependent |
| RA | 4,285,970 | C→T | 30.4% | intergenic (+248/+283) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,316,156 | T→G | 18.4% | intergenic (‑598/+60) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,316,157 | C→T | 16.9% | intergenic (‑599/+59) | yjdN ← / ← yjdM | metalloprotein superfamily protein/zinc‑ribbon family protein |
| RA | 4,324,099 | T→C | 8.0% | N437D (AAT→GAT) | eptA ← | lipid A phosphoethanolamine transferase |
| RA | 4,332,586 | C→A | 11.4% | R287S (CGT→AGT) | melA → | alpha‑galactosidase, NAD(P)‑binding |
| RA | 4,336,205 | G→A | 9.4% | G313G (GGC→GGT) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,238 | A→G | 13.3% | R302R (CGT→CGC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,241 | G→A | 13.8% | I301I (ATC→ATT) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,244 | A→C | 13.5% | V300V (GTT→GTG) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,250 | A→G | 14.8% | I298I (ATT→ATC) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,259 | C→A | 9.6% | A295A (GCG→GCT) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,336,274 | G→A | 11.9% | G290G (GGC→GGT) | fumB ← | anaerobic class I fumarate hydratase (fumarase B) |
| RA | 4,391,049 | G→A | 9.3% | Q187Q (CAG→CAA) | hflX → | GTPase, stimulated by 50S subunit binding |
| RA | 4,434,547 | C→T | 10.3% | P207S (CCG→TCG) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,436,184 | C→A | 8.2% | I752I (ATC→ATA) | tamB → | translocation and assembly module for autotransporter export, inner membrane subunit |
| RA | 4,498,944 | G→A | 10.9% | pseudogene (119/785 nt) | insO → | pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,498,951 | C→A | 6.4% | pseudogene (126/785 nt) | insO → | pseudogene, IS911 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,501,840 | T→A | 7.3% | K131M (AAG→ATG) | fecD ← | iron‑dicitrate transporter subunit |
| RA | 4,508,819 | G→C | 7.2% | pseudogene (282/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,508,826 | G→A | 6.2% | pseudogene (289/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,508,830 | A→G | 6.2% | pseudogene (293/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,508,885 | T→A | 5.7% | pseudogene (348/504 nt) | insB1 → | IS1 transposase B;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related |
| RA | 4,513,196 | G→A | 5.8% | A239V (GCC→GTC) | yjhG ← | putative dehydratase |
| RA | 4,541,803 | C→T | 6.7% | Y117Y (TAC→TAT) | uxuA → | mannonate hydrolase |
| RA | 4,575,004 | Δ1 bp | 8.3% | pseudogene (1629/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,575,005 | Δ1 bp | 8.3% | pseudogene (1628/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,575,006 | Δ1 bp | 8.3% | pseudogene (1627/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,575,007 | Δ1 bp | 8.3% | pseudogene (1626/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,575,008 | Δ1 bp | 8.3% | pseudogene (1625/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,575,009 | Δ1 bp | 8.3% | pseudogene (1624/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,575,010 | Δ1 bp | 8.3% | pseudogene (1623/3567 nt) | hsdR ← | pseudogene, premature stop codon, host restriction; endonuclease R |
| RA | 4,608,351 | C→A | 8.7% | V102V (GTC→GTA) | deoA → | thymidine phosphorylase |
| RA | 4,608,500 | C→T | 10.0% | A152V (GCG→GTG) | deoA → | thymidine phosphorylase |
| RA | 4,621,024 | G→A | 7.1% | G159S (GGC→AGC) | slt → | lytic murein transglycosylase, soluble |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 1310589 | 1310710 | 122 | 3 [1] | [2] 3 | [trpA] | [trpA] |
| * | * | ÷ | CP009273 | 1540360 | 1540420 | 61 | 3 [2] | [2] 3 | yddL/yddG | putative lipoprotein;putative membrane; Not classified; putative outer membrane porin protein/aromatic amino acid exporter |
| * | * | ÷ | CP009273 | 2050918 | 2050956 | 39 | 3 [1] | [0] 3 | yeeN | UPF0082 family protein |
| * | * | ÷ | CP009273 | 2463627 | 2463744 | 118 | 6 [2] | [1] 4 | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| * | * | ÷ | CP009273 | 3448799 | 3448836 | 38 | 4 [0] | [0] 4 | gspA/gspC | general secretory pathway component, cryptic/general secretory pathway component, cryptic |
| * | * | ÷ | CP009273 | 3745306 | 3745464 | 159 | 3 [1] | [2] 3 | [yiaU] | [yiaU] |
| * | * | ÷ | CP009273 | 3763048 | 3763143 | 96 | 3 [2] | [1] 4 | yibV | pseudogene |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 11 (0.340) | 23 (0.710) | 16/248 | NT | 67.6% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
| * | ? | CP009273 | = 1203261 | 9 (0.280) | 17 (0.610) | 9/216 | NT | 81.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 0 (0.000) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||