mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 43.1% | 22.6 / 33.9 | 65 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 161,056 | 0 | C | G | 37.5% | 34.6 / 14.4 | 32 | intergenic (+35/‑161) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| * | CP009273 | 910,646 | 0 | C | G | 26.3% | 73.7 / 15.0 | 38 | intergenic (‑333/+162) | ybjE/aqpZ | putative transporter/aquaporin Z |
| * | CP009273 | 4,008,453 | 0 | G | T | 24.7% | 143.6 / 14.6 | 85 | D681Y (GAT→TAT) | metE | 5‑methyltetrahydropteroyltriglutamate‑ homocysteine S‑methyltransferase |
| * | CP009273 | 357,031 | 0 | C | A | 24.0% | 77.7 / 17.6 | 50 | V181F (GTT→TTT) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 2,447,745 | 0 | C | A | 22.1% | 124.3 / 10.7 | 77 | pseudogene (736/2646 nt) | yfcU | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 44 (0.550) | 12 (0.170) | 7/236 | 3.8 | 22.7% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 43 (0.610) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1465804 = | 88 (1.100) | 4 (0.050) | 4/258 | 5.3 | 4.6% | pseudogene (1031/3497 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| ? | CP009273 | = 1465800 | 83 (1.080) | pseudogene (1027/3497 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 | |||||
| * | ? | CP009273 | = 1308828 | 68 (0.850) | 5 (0.060) | 3/268 | 5.9 | 6.8% | coding (552/639 nt) | ompW | outer membrane protein W |
| ? | CP009273 | 1308837 = | 69 (0.870) | coding (561/639 nt) | ompW | outer membrane protein W | |||||