mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,402,596 | 0 | T | G | 27.6% | 141.4 / 28.5 | 76 | V131V (GTT→GTG) | yjfM | DUF1190 family protein |
| * | CP009273 | 838,672 | 0 | G | T | 26.5% | 179.1 / 28.9 | 83 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 104,042 | 0 | A | T | 25.0% | 103.9 / 15.1 | 44 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 1,828,727 | 0 | G | C | 23.9% | 117.8 / 13.1 | 47 | E119Q (GAA→CAA) ‡ | ydjY | putative ferrodoxin‑like lipoprotein |
| * | CP009273 | 1,828,729 | 0 | A | C | 23.9% | 104.5 / 13.1 | 46 | E119D (GAA→GAC) ‡ | ydjY | putative ferrodoxin‑like lipoprotein |
| * | CP009273 | 2,632,628 | 0 | C | G | 23.8% | 223.6 / 11.0 | 80 | E5D (GAG→GAC) | yfgM | putative anti‑RcsB factor |
| * | CP009273 | 838,658 | 0 | G | T | 23.3% | 175.7 / 12.7 | 73 | A291S (GCC→TCC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 4,402,598 | 0 | C | G | 22.8% | 216.6 / 14.4 | 79 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 2,170,734 | 0 | G | T | 21.5% | 153.1 / 11.5 | 80 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,632,624 | 0 | C | G | 21.2% | 251.6 / 10.6 | 89 | E7Q (GAA→CAA) | yfgM | putative anti‑RcsB factor |
| * | CP009273 | 155,588 | 0 | C | A | 21.1% | 134.2 / 14.4 | 57 | C9F (TGC→TTC) | pcnB | poly(A) polymerase |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 111 (1.040) | 5 (0.050) | 5/252 | 14.1 | 4.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 102 (1.020) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 3361155 | 78 (0.730) | 4 (0.040) | 4/250 | 14.8 | 5.2% | intergenic (+154/‑31) | yhcF/yhcG | putative transcriptional regulator/DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily |
| ? | CP009273 | = 3361182 | 74 (0.750) | intergenic (+181/‑4) | yhcF/yhcG | putative transcriptional regulator/DUF1016 family protein in the PD‑(D/E)XK nuclease superfamily | |||||
| * | ? | CP009273 | = 3403042 | 90 (0.840) | 4 (0.040) | 4/252 | 14.9 | 4.3% | coding (614/882 nt) | prmA | methyltransferase for 50S ribosomal subunit protein L11 |
| ? | CP009273 | = 3403130 | 94 (0.940) | coding (702/882 nt) | prmA | methyltransferase for 50S ribosomal subunit protein L11 | |||||
| * | ? | CP009273 | 172519 = | 95 (0.890) | 4 (0.040) | 4/254 | 14.9 | 4.3% | coding (926/1422 nt) | clcA | H(+)/Cl(‑) exchange transporter |
| ? | CP009273 | 172596 = | 87 (0.860) | coding (1003/1422 nt) | clcA | H(+)/Cl(‑) exchange transporter | |||||
| * | ? | CP009273 | = 535587 | 111 (1.040) | 4 (0.040) | 4/256 | 15.0 | 3.8% | coding (985/1362 nt) | allB | allantoinase |
| ? | CP009273 | = 535632 | 95 (0.940) | coding (1030/1362 nt) | allB | allantoinase | |||||
| * | ? | CP009273 | = 2678508 | 104 (0.970) | 4 (0.040) | 4/258 | 15.1 | 3.8% | coding (359/1254 nt) | glyA | serine hydroxymethyltransferase |
| ? | CP009273 | = 2678527 | 104 (1.020) | coding (340/1254 nt) | glyA | serine hydroxymethyltransferase | |||||
| * | ? | CP009273 | 2571220 = | 117 (1.090) | 4 (0.040) | 4/260 | 15.2 | 3.9% | coding (517/2280 nt) | maeB | malic enzyme: putative oxidoreductase/putative phosphotransacetylase |
| ? | CP009273 | 2571241 = | 87 (0.840) | coding (496/2280 nt) | maeB | malic enzyme: putative oxidoreductase/putative phosphotransacetylase | |||||
| * | ? | CP009273 | 2383163 = | 105 (0.980) | 4 (0.040) | 4/260 | 15.2 | 3.8% | coding (569/849 nt) | yfbP | TPR‑like repeats‑containing protein |
| ? | CP009273 | 2383196 = | 103 (1.000) | coding (602/849 nt) | yfbP | TPR‑like repeats‑containing protein | |||||
| * | ? | CP009273 | = 1974054 | 120 (1.120) | 4 (0.040) | 4/260 | 15.2 | 3.4% | coding (1040/1425 nt) | otsA | trehalose‑6‑phosphate synthase |
| ? | CP009273 | = 1974086 | 112 (1.090) | coding (1008/1425 nt) | otsA | trehalose‑6‑phosphate synthase | |||||
| * | ? | CP009273 | 3597896 = | 129 (1.200) | 4 (0.040) | 4/264 | 15.3 | 3.0% | coding (144/597 nt) | rsmD | 16S rRNA m(2)G966 methyltransferase, SAM‑dependent |
| ? | CP009273 | 3597926 = | 137 (1.310) | coding (174/597 nt) | rsmD | 16S rRNA m(2)G966 methyltransferase, SAM‑dependent | |||||