mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,178,908 | 0 | T | G | 43.2% | 81.8 / 30.2 | 74 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 2,170,734 | 0 | G | T | 39.6% | 27.8 / 56.7 | 96 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 357,022 | 0 | C | A | 30.0% | 141.8 / 11.0 | 91 | E184* (GAA→TAA) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 104,042 | 0 | A | T | 26.8% | 171.8 / 22.3 | 72 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 104,041 | 0 | G | T | 25.7% | 141.5 / 18.0 | 74 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 357,031 | 0 | C | A | 25.3% | 150.0 / 12.8 | 88 | V181F (GTT→TTT) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 838,658 | 0 | G | T | 24.5% | 178.5 / 16.6 | 98 | A291S (GCC→TCC) ‡ | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 4,402,598 | 0 | C | G | 23.8% | 212.3 / 10.8 | 88 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 838,659 | 0 | C | G | 23.5% | 227.9 / 17.3 | 98 | A291G (GCC→GGC) ‡ | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 838,672 | 0 | G | T | 22.7% | 202.6 / 21.5 | 110 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 4,402,656 | 0 | C | A | 22.1% | 153.4 / 10.2 | 69 | N151K (AAC→AAA) | yjfM | DUF1190 family protein |
| * | CP009273 | 2,170,746 | 0 | C | A | 21.8% | 192.4 / 20.3 | 112 | intergenic (‑63/+245) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 357,034 | 0 | G | C | 20.7% | 218.1 / 11.7 | 88 | R180G (CGG→GGG) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 2,463,951 | 0 | G | T | 20.4% | 91.3 / 12.1 | 49 | intergenic (+10/‑343) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| * | CP009273 | 1,159,998 | 0 | A | T | 20.3% | 176.1 / 14.5 | 74 | I150F (ATT→TTT) | nagZ | beta N‑acetyl‑glucosaminidase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360286 | NA (NA) | 4 (0.040) +AATTC |
4/258 | 7.7 | 3.7% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 108 (0.930) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | 3469263 = | 146 (1.250) | 5 (0.040) | 3/256 | 8.2 | 3.8% | coding (537/723 nt) | yheO | putative PAS domain‑containing DNA‑binding transcriptional regulator |
| ? | CP009273 | 3788010 = | 113 (1.010) | coding (664/933 nt) | hldD | ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding | |||||
| * | ? | CP009273 | = 1137534 | 127 (1.090) | 3 (0.030) | 3/264 | 8.4 | 2.6% | coding (2290/3186 nt) | rne | fused ribonucleaseE: endoribonuclease/RNA‑binding protein/RNA degradosome binding protein |
| ? | CP009273 | 1482263 = | 98 (0.850) | coding (772/801 nt) | ydcF | DUF218 superfamily protein, SAM‑binding | |||||
| * | ? | CP009273 | = 2382745 | 73 (0.630) | 3 (0.030) | 3/268 | 8.5 | 4.3% | coding (151/849 nt) | yfbP | TPR‑like repeats‑containing protein |
| ? | CP009273 | 2382751 = | 61 (0.520) | coding (157/849 nt) | yfbP | TPR‑like repeats‑containing protein | |||||