| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,461,853:1 | +C | 8.0% | coding (360/936 nt) | pyrB ← | aspartate carbamoyltransferase, catalytic subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,461,853 | 1 | . | C | 8.0% | 215.7 / 14.5 | 50 | coding (360/936 nt) | pyrB | aspartate carbamoyltransferase, catalytic subunit |
| Reads supporting (aligned to +/- strand): ref base . (19/27); new base C (2/2); total (21/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.17e-01 | |||||||||||
CATATTTCAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAG > CP009273/4461714‑4461991 | cATATGTCAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCg < 1:839711/140‑1 (MQ=255) tttCAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑Gaca > 2:510565/1‑138 (MQ=255) tttCAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑Gaaa > 1:316164/1‑140 (MQ=255) tttCAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑Gaaa > 2:667754/1‑140 (MQ=255) tttCAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTGGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑Gaaa > 1:406399/1‑140 (MQ=255) cAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACt < 1:737808/140‑1 (MQ=255) cAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACt < 1:685942/140‑1 (MQ=255) caaccaTTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGcc > 1:303989/1‑140 (MQ=255) gACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGcgccg > 2:279420/1‑140 (MQ=255) gACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGcgccg > 2:278782/1‑140 (MQ=255) gTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCg < 2:729706/140‑1 (MQ=255) ccTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATc > 1:590918/1‑140 (MQ=255) cTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTATGCGTCGGATGTTGGTTGGAGCCATCACCGGCAGTCAGTACCGGTACATTGCCC‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCa > 1:612121/1‑140 (MQ=255) ccTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCa > 1:22148/1‑140 (MQ=255) tAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGCGAGCTATTGGT‑GCCA‑GTGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGt > 2:129526/1‑140 (MQ=255) tAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGCGAGCTATTGGT‑GCCA‑GTGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGt > 2:607258/1‑140 (MQ=255) tGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGa < 2:601151/113‑1 (MQ=255) tGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGa > 1:601151/1‑113 (MQ=255) atgTCCAGCACGGTGTGCGGCGGATGTTGGTTGGCGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCt < 2:660385/138‑1 (MQ=255) aaGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCt > 2:508725/1‑140 (MQ=255) aaGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCt > 2:724131/1‑140 (MQ=255) aaGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCt < 2:331285/140‑1 (MQ=255) aaGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCt < 2:819943/140‑1 (MQ=255) aaGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCt < 2:87002/140‑1 (MQ=255) aaGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCt > 2:91240/1‑140 (MQ=255) cAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATaa < 1:102151/140‑1 (MQ=255) aGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGCGAGCTATTGGT‑GCCA‑GTGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGaaa < 1:607258/140‑1 (MQ=255) aGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGCGAGCTATTGGT‑GCCA‑GTGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGaaa < 1:129526/140‑1 (MQ=255) ggTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGaaa < 1:819084/140‑1 (MQ=255) ggTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGaaa < 1:333256/140‑1 (MQ=255) gCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTa < 1:91240/140‑1 (MQ=255) gCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTa < 1:508725/140‑1 (MQ=255) gATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGcc > 1:510897/1‑140 (MQ=255) aTGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCa < 2:594650/140‑1 (MQ=255) aTGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGGGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCa < 2:829084/140‑1 (MQ=255) cATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCttt < 2:776878/140‑1 (MQ=255) cATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCttt < 2:979320/140‑1 (MQ=255) ccGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTAcc < 2:406399/140‑1 (MQ=255) ccGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTAcc < 1:661059/140‑1 (MQ=255) ccGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTAcc < 1:486768/140‑1 (MQ=255) ccGGCATTCAGGACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATCACGCTTCACTATCGCATCGACGTAAGTGCTGATAACCGAAAGGGTATCGGCCAGCGTTTCGCCCTTTTTAcc < 2:532630/140‑1 (MQ=255) acGGCATTCAGTACCGTTATATTGCCT‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGAGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCTGCCAGCGTTTCGCCCTTTTTAcc < 2:316164/139‑1 (MQ=255) gTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCt < 2:41870/45‑1 (MQ=255) gTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCt > 1:41870/1‑45 (MQ=255) gTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGTTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGgcg > 2:613260/1‑140 (MQ=255) gTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTAccc > 2:517300/1‑125 (MQ=255) gTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTAccc > 2:21348/1‑125 (MQ=255) gTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTAccc < 1:517300/125‑1 (MQ=255) gTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTAccc < 1:21348/125‑1 (MQ=255) tACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGgcgc < 2:510897/140‑1 (MQ=255) cG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGgag < 1:613129/140‑1 (MQ=255) | CATATTTCAGGTCACCAACCATTGCGACGTGGAGATTGTCCAGACGCCCCTGGGTTTCCTGAATAGTGAATAAGTCCAGCAAGGTTTGCGTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCG‑GAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAG > CP009273/4461714‑4461991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |