breseq  version 0.35.4  revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal new junction evidence (sorted from low to high skew)
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3806753 =259 (1.230)5 (0.030) 5/232 NT 2.0% coding (663/1221 nt) dfp fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding
?CP009273 = 3806749 253 (1.300)coding (659/1221 nt) dfp fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding
* ? CP009273 3580110 =474 (2.260)4 (0.020) 4/232 NT 0.88% coding (74/1743 nt) ggt gamma‑glutamyltranspeptidase
?CP009273 = 3580106 459 (2.350)coding (78/1743 nt) ggt gamma‑glutamyltranspeptidase
* ? CP009273 = 2283592NA (NA)3 (0.010) 3/246 NT 1.1% noncoding (1/1195 nt) IS5 repeat region
?CP009273 2399636 = 275 (1.330)coding (485/939 nt) lrhA transcriptional repressor of flagellar, motility and chemotaxis genes
* ? CP009273 = 2263723122 (0.580)5 (0.020) 3/250 NT 3.9% coding (266/567 nt) mepS murein DD‑endopeptidase, space‑maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein
?CP009273 = 2283592 NA (NA)noncoding (1/1195 nt) IS5 repeat region
* ? CP009273 1940172 =280 (1.330)4 (0.020) 3/246 NT 1.9% coding (62/612 nt) ruvA component of RuvABC resolvasome, regulatory subunit
?CP009273 = 4459832 136 (0.660)coding (2391/2697 nt) mgtA magnesium transporter
* ? CP009273 = 370385360 (2.350)5 (0.040) 4/164 NT 1.5% intergenic (+48/‑530) mhpE/mhpT 4‑hyroxy‑2‑oxovalerate/4‑hydroxy‑2‑oxopentanoic acid aldolase, class I/3‑hydroxyphenylpropionic transporter
?CP009273 = 372977 NA (NA)noncoding (187/187 nt) REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences