mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,402,596 | 0 | T | G | 21.0% | 140.9 / 11.4 | 62 | V131V (GTT→GTG) | yjfM | DUF1190 family protein |
| * | CP009273 | 4,402,598 | 0 | C | G | 20.3% | 165.5 / 15.8 | 64 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| Marginal new junction evidence (lowest skew 10 of 197 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2721617 = | NA (NA) | 27 (0.320) | 23/254 | 3.7 | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 220697 | NA (NA) | 27 (0.310) | 20/262 | 4.5 | NA | noncoding (440/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 220750 | NA (NA) | noncoding (493/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 270331 = | NA (NA) | 26 (0.320) | 17/250 | 4.9 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270374 = | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 220861 | NA (NA) | 22 (0.260) | 16/254 | 5.2 | NA | noncoding (604/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 220890 | NA (NA) | noncoding (633/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 311167 = | NA (NA) | 14 (0.160) | 14/260 | 5.9 | NA | coding (166/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | 311233 = | NA (NA) | coding (232/300 nt) | insE1 | IS3 transposase A | |||||
| * | ? | CP009273 | = 4161603 | 51 (0.580) | 14 (0.170) | 13/254 | 6.0 | 22.5% | noncoding (39/120 nt) | rrfB | 5S ribosomal RNA of rrnB operon |
| ? | CP009273 | = 4203048 | NA (NA) | noncoding (81/120 nt) | rrfE | 5S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | = 4161603 | 51 (0.580) | 14 (0.170) | 13/254 | 6.0 | 22.7% | noncoding (39/120 nt) | rrfB | 5S ribosomal RNA of rrnB operon |
| ? | CP009273 | = 4161645 | 47 (0.570) | noncoding (81/120 nt) | rrfB | 5S ribosomal RNA of rrnB operon | |||||
| * | ? | CP009273 | = 3940147 | 22 (0.250) | 14 (0.170) | 13/254 | 6.0 | 28.3% | noncoding (88/120 nt) | rrfC | 5S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4161596 | 50 (0.600) | noncoding (32/120 nt) | rrfB | 5S ribosomal RNA of rrnB operon | |||||
| * | ? | CP009273 | 3417066 = | NA (NA) | 14 (0.170) | 13/254 | 6.0 | 22.5% | noncoding (81/120 nt) | rrfD | 5S ribosomal RNA of rrnD operon |
| ? | CP009273 | = 4161603 | 51 (0.580) | noncoding (39/120 nt) | rrfB | 5S ribosomal RNA of rrnB operon | |||||
| * | ? | CP009273 | 3416814 = | 92 (1.050) | 14 (0.170) | 13/254 | 6.0 | 17.0% | noncoding (88/120 nt) | rrfF | 5S ribosomal RNA of rrnD operon |
| ? | CP009273 | = 4161596 | 50 (0.600) | noncoding (32/120 nt) | rrfB | 5S ribosomal RNA of rrnB operon | |||||