mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 44.2% | ‑2.9 / 69.7 | 96 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 838,652 | 0 | T | G | 33.0% | 194.8 / 25.2 | 106 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,170,746 | 0 | C | A | 27.8% | 166.8 / 13.5 | 114 | intergenic (‑63/+245) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,404,729 | 0 | C | A | 25.2% | 189.3 / 24.9 | 107 | V35F (GTC→TTC) | yfbS | putative transporter |
| * | CP009273 | 2,170,766 | 0 | C | A | 23.9% | 211.1 / 23.1 | 118 | intergenic (‑83/+225) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,170,702 | 0 | G | T | 23.3% | 116.5 / 10.4 | 86 | intergenic (‑19/+289) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 4,402,598 | 0 | C | G | 22.1% | 250.0 / 15.0 | 95 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 838,658 | 0 | G | T | 21.9% | 195.6 / 15.2 | 105 | A291S (GCC→TCC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 104,041 | 0 | G | T | 21.6% | 99.0 / 17.0 | 51 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 910,669 | 0 | A | T | 20.6% | 122.9 / 12.0 | 71 | intergenic (‑356/+139) | ybjE/aqpZ | putative transporter/aquaporin Z |
| * | CP009273 | 1,160,024 | 0 | G | C | 20.4% | 211.4 / 10.8 | 99 | M158I (ATG→ATC) | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 4,402,596 | 0 | T | G | 20.0% | 216.1 / 11.8 | 95 | V131V (GTT→GTG) | yjfM | DUF1190 family protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1463076 = | NA (NA) | 3 (0.030) | 3/266 | 8.0 | 2.3% | noncoding (422/1331 nt) | IS2 | repeat region |
| ? | CP009273 | = 1553956 | 129 (1.240) | coding (212/897 nt) | ddpC | D‑ala‑D‑ala transporter subunit | |||||
| * | ? | CP009273 | = 1426137 | 96 (0.920) | 3 (0.030) | 3/268 | 8.0 | 3.1% | coding (2832/3363 nt) | stfR | Rac prophage; putative tail fiber protein |
| ? | CP009273 | 1426142 = | 93 (0.890) | coding (2837/3363 nt) | stfR | Rac prophage; putative tail fiber protein | |||||
| * | ? | CP009273 | 742673 = | 158 (1.520) | 3 (0.030) | 3/268 | 8.0 | 2.2% | coding (553/1047 nt) | abrB | regulator of aidB expression; inner membrane protein |
| ? | CP009273 | = 3236284 | 106 (1.020) | coding (390/1488 nt) | uxaA | altronate hydrolase | |||||