mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 38.2% | 59.2 / 66.9 | 123 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 4,402,598 | 0 | C | G | 30.8% | 175.0 / 13.7 | 80 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 104,041 | 0 | G | T | 28.1% | 99.2 / 22.7 | 64 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 3,997,395 | 0 | G | C | 28.0% | 221.1 / 14.4 | 97 | F48L (TTC→TTG) | rarD | putative chloramphenical resistance permease |
| * | CP009273 | 838,652 | 0 | T | G | 25.8% | 181.3 / 10.3 | 93 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 161,056 | 0 | C | G | 25.0% | 88.6 / 10.6 | 48 | intergenic (+35/‑161) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| * | CP009273 | 2,170,746 | 0 | C | A | 24.6% | 188.6 / 24.4 | 123 | intergenic (‑63/+245) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,170,766 | 0 | C | A | 24.2% | 199.4 / 32.3 | 120 | intergenic (‑83/+225) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,178,908 | 0 | T | G | 22.8% | 172.9 / 18.6 | 92 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 104,042 | 0 | A | T | 22.8% | 138.8 / 17.5 | 61 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 357,031 | 0 | C | A | 21.6% | 167.1 / 10.1 | 88 | V181F (GTT→TTT) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 2,998,333 | 0 | T | A | 21.4% | 246.6 / 15.9 | 105 | Q271H (CAA→CAT) | ygeV | putative sigma‑54‑interacting transcriptional activator |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3399761 = | 176 (1.380) | 4 (0.030) | 4/246 | 8.2 | 2.4% | coding (486/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| ? | CP009273 | = 3399757 | 169 (1.450) | coding (482/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit | |||||
| * | ? | CP009273 | 4532499 = | 86 (0.670) | 4 (0.030) | 3/252 | 9.0 | 4.5% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 90 (0.760) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 707099 = | 149 (1.170) | 3 (0.020) | 3/262 | 9.2 | 2.4% | coding (256/294 nt) | ybfE | LexA‑regulated protein, CopB family |
| ? | CP009273 | = 2004150 | 97 (0.780) | coding (70/480 nt) | yedL | putative acyl transferase | |||||