mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 76 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4500919 = | 104 (1.130) | 3 (0.030) | 3/246 | NT | 2.9% | coding (356/768 nt) | fecE | iron‑dicitrate transporter subunit |
| ? | CP009273 | 4500958 = | 102 (1.140) | coding (317/768 nt) | fecE | iron‑dicitrate transporter subunit | |||||
| * | ? | CP009273 | 4495450 = | 80 (0.870) | 3 (0.030) | 3/248 | NT | 3.7% | coding (347/1119 nt) | yjhC | putative oxidoreductase |
| ? | CP009273 | 4495494 = | 78 (0.870) | coding (391/1119 nt) | yjhC | putative oxidoreductase | |||||
| * | ? | CP009273 | = 4273131 | 76 (0.820) | 3 (0.030) | 3/244 | NT | 3.8% | intergenic (‑128/+50) | yjcF/actP | pentapeptide repeats protein/acetate transporter |
| ? | CP009273 | = 4273182 | 78 (0.880) | coding (1649/1650 nt) | actP | acetate transporter | |||||
| * | ? | CP009273 | = 4256399 | 150 (1.620) | 4 (0.040) | 4/248 | NT | 2.7% | coding (690/1080 nt) | alr | alanine racemase, biosynthetic, PLP‑binding |
| ? | CP009273 | = 4256435 | 138 (1.530) | coding (726/1080 nt) | alr | alanine racemase, biosynthetic, PLP‑binding | |||||
| * | ? | CP009273 | = 4216990 | 97 (1.050) | 4 (0.050) | 4/242 | NT | 3.9% | coding (3235/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | CP009273 | = 4217022 | 107 (1.220) | coding (3267/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | CP009273 | 4177587 = | 115 (1.250) | 3 (0.030) | 3/246 | NT | 2.8% | coding (2310/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| ? | CP009273 | 4177628 = | 98 (1.100) | coding (2351/4224 nt) | rpoC | RNA polymerase, beta prime subunit | |||||
| * | ? | CP009273 | = 4150173 | 80 (0.870) | 4 (0.050) | 4/242 | NT | 4.8% | coding (546/1401 nt) | sthA | pyridine nucleotide transhydrogenase, soluble |
| ? | CP009273 | = 4150197 | 82 (0.930) | coding (522/1401 nt) | sthA | pyridine nucleotide transhydrogenase, soluble | |||||
| * | ? | CP009273 | = 4093113 | 94 (1.020) | 3 (0.030) | 3/242 | NT | 3.1% | coding (364/675 nt) | yiiM | 6‑N‑hydroxylaminopurine resistance protein |
| ? | CP009273 | = 4093141 | 95 (1.080) | coding (392/675 nt) | yiiM | 6‑N‑hydroxylaminopurine resistance protein | |||||
| * | ? | CP009273 | 3993538 = | NA (NA) | 6 (0.070) | 6/242 | NT | 4.3% | noncoding (29/103 nt) | RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3993586 = | 134 (1.520) | noncoding (77/103 nt) | RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP288 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | CP009273 | 3943546 = | 108 (1.170) | 4 (0.050) | 4/240 | NT | 4.7% | intergenic (‑217/‑136) | yifB/ilvL | bifunctional magnesium chelatase family protein and putative transcriptional regulator/ilvG operon leader peptide |
| ? | CP009273 | 3943598 = | 61 (0.700) | intergenic (‑269/‑84) | yifB/ilvL | bifunctional magnesium chelatase family protein and putative transcriptional regulator/ilvG operon leader peptide | |||||