mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 31.0% | 97.8 / 51.5 | 113 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,178,908 | 0 | T | G | 29.6% | 118.8 / 23.5 | 81 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 838,652 | 0 | T | G | 28.2% | 145.5 / 15.9 | 85 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 104,042 | 0 | A | T | 26.0% | 117.0 / 14.6 | 51 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 838,658 | 0 | G | T | 25.3% | 130.5 / 23.0 | 83 | A291S (GCC→TCC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,998,305 | 0 | G | T | 25.0% | 143.6 / 16.8 | 84 | Q281K (CAA→AAA) | ygeV | putative sigma‑54‑interacting transcriptional activator |
| * | CP009273 | 357,031 | 0 | C | A | 24.7% | 141.2 / 11.6 | 78 | V181F (GTT→TTT) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 4,402,598 | 0 | C | G | 23.5% | 159.9 / 10.7 | 70 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 3,227,055 | 0 | A | C | 22.6% | 190.1 / 10.9 | 85 | intergenic (+13/+32) | fadH/higA | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked/antitoxinof the HigB‑HigA toxin‑antitoxin system |
| * | CP009273 | 4,375,475 | 0 | A | T | 21.3% | 322.9 / 20.1 | 123 | D89V (GAT→GTT) | yjeN | uncharacterized protein |
| * | CP009273 | 910,669 | 0 | A | T | 20.6% | 133.8 / 13.5 | 74 | intergenic (‑356/+139) | ybjE/aqpZ | putative transporter/aquaporin Z |
| * | CP009273 | 4,234,523 | 0 | C | G | 20.4% | 217.5 / 14.0 | 99 | E161Q (GAA→CAA) | malF | maltose transporter subunit |
| * | CP009273 | 4,402,608 | 0 | G | T | 20.0% | 141.2 / 15.4 | 75 | L135F (TTG→TTT) | yjfM | DUF1190 family protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 56 (0.500) | 4 (0.040) | 3/250 | 8.2 | 6.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 71 (0.680) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 3910552 | 84 (0.750) | 3 (0.030) | 3/260 | 8.4 | 3.6% | coding (184/1383 nt) | atpD | F1 sector of membrane‑bound ATP synthase, beta subunit |
| ? | CP009273 | = 4080561 | 80 (0.740) | coding (200/1056 nt) | yiiG | DUF3829 family lipoprotein | |||||
| * | ? | CP009273 | = 3222987 | 83 (0.740) | 3 (0.030) | 3/260 | 8.4 | 3.6% | coding (741/2352 nt) | ygjK | alpha‑glucosidase |
| ? | CP009273 | 3417568 = | NA (NA) | noncoding (2575/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | = 3152265 | 151 (1.350) | 3 (0.030) | 3/262 | 8.4 | 2.1% | intergenic (+22/+21) | yqhH/ygiQ | outer membrane lipoprotein, Lpp paralog/Radical SAM superfamily protein |
| ? | CP009273 | = 3594531 | 129 (1.180) | coding (916/1059 nt) | ftsX | inner membrane putative ABC superfamily transporter permease | |||||
| * | ? | CP009273 | = 768302 | 138 (1.240) | 3 (0.030) | 3/260 | 8.4 | 2.5% | coding (1389/1569 nt) | cydA | cytochrome d terminal oxidase, subunit I |
| ? | CP009273 | 1317793 = | 103 (0.950) | coding (317/882 nt) | yciV | PHP domain protein | |||||
| * | ? | CP009273 | 1730548 = | 114 (1.020) | 3 (0.030) | 3/264 | 8.5 | 2.6% | coding (1000/1170 nt) | ydhP | putative transporter |
| ? | CP009273 | = 2900408 | 109 (0.990) | coding (893/1299 nt) | eno | enolase | |||||
| * | ? | CP009273 | 1395839 = | 82 (0.740) | 3 (0.030) | 3/266 | 8.5 | 2.9% | coding (192/1527 nt) | abgT | p‑aminobenzoyl‑glutamate transporter; membrane protein |
| ? | CP009273 | 4392409 = | 123 (1.110) | coding (555/1260 nt) | hflK | modulator for HflB protease specific for phage lambda cII repressor | |||||
| * | ? | CP009273 | = 1453309 | 105 (0.940) | 3 (0.030) | 3/268 | 8.6 | 2.8% | coding (789/789 nt) | paaG | 1,2‑epoxyphenylacetyl‑CoA isomerase, oxepin‑CoA‑forming |
| ? | CP009273 | 1453313 = | 104 (0.930) | coding (3/1428 nt) | paaH | 3‑hydroxyadipyl‑CoA dehydrogenase, NAD+‑dependent | |||||