mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,402,598 | 0 | C | G | 22.9% | 137.7 / 11.2 | 61 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 104,041 | 0 | G | T | 20.4% | 90.3 / 10.8 | 44 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| Marginal new junction evidence (lowest skew 10 of 219 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2721617 = | NA (NA) | 48 (0.500) | 32/262 | 3.5 | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 220695 = | NA (NA) | 36 (0.360) | 25/270 | 4.9 | NA | noncoding (438/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 220754 = | NA (NA) | noncoding (497/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 270385 = | NA (NA) | 25 (0.260) | 23/260 | 5.1 | NA | noncoding (180/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270482 = | NA (NA) | noncoding (277/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | 1390824 = | NA (NA) | 35 (0.350) | 24/272 | 5.2 | 21.2% | coding (492/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | = 1422557 | 132 (1.290) | noncoding (495/1196 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 223172 | 23 (0.230) | 35 (0.360) | 23/262 | 5.2 | 61.6% | noncoding (927/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 3937020 = | NA (NA) | 26 (0.260) | 22/272 | 5.6 | NA | intergenic (+150/‑44) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | CP009273 | 3937064 = | NA (NA) | noncoding (1/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | CP009273 | = 270331 | NA (NA) | 29 (0.300) | 21/264 | 5.7 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 270426 | NA (NA) | noncoding (221/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | 2060032 = | 42 (0.410) | 23 (0.240) | 20/262 | 5.9 | 36.6% | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2095685 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 270058 = | NA (NA) | 23 (0.240) | 20/262 | 5.9 | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 270121 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 269749 = | NA (NA) | 22 (0.230) | 18/264 | 6.5 | NA | noncoding (1112/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 269794 = | NA (NA) | noncoding (1067/1195 nt) | IS5 | repeat region | |||||