mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 39.7% | 8.4 / 36.6 | 63 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,998,305 | 0 | G | T | 30.4% | 52.5 / 12.5 | 56 | Q281K (CAA→AAA) | ygeV | putative sigma‑54‑interacting transcriptional activator |
| * | CP009273 | 2,170,746 | 0 | C | A | 29.9% | 126.1 / 15.9 | 79 | intergenic (‑63/+245) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,170,766 | 0 | C | A | 25.6% | 142.8 / 14.0 | 79 | intergenic (‑83/+225) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 104,042 | 0 | A | T | 23.4% | 107.5 / 11.6 | 50 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 104,041 | 0 | G | T | 22.0% | 76.3 / 11.6 | 50 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 68,486 | 0 | T | G | 21.5% | 171.9 / 13.1 | 79 | L217V (TTG→GTG) | yabI | DedA family inner membrane protein |
| * | CP009273 | 513,767 | 0 | G | T | 20.9% | 175.3 / 13.4 | 86 | intergenic (‑32/+29) | ybbN/ybbO | DnaK co‑chaperone, thioredoxin‑like protein/putative oxidoreductase |
| * | CP009273 | 838,672 | 0 | G | T | 20.5% | 140.4 / 11.2 | 73 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 1,159,994 | 0 | G | T | 20.0% | 193.1 / 12.9 | 90 | R148R (CGG→CGT) | nagZ | beta N‑acetyl‑glucosaminidase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 105 (1.150) | 6 (0.070) | 6/236 | 5.2 | 7.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 64 (0.800) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 2386097 = | 94 (1.030) | 5 (0.060) | 5/248 | 5.9 | 5.3% | coding (424/1530 nt) | nuoM | NADH:ubiquinone oxidoreductase, membrane subunit M |
| ? | CP009273 | = 2386093 | 92 (1.090) | coding (428/1530 nt) | nuoM | NADH:ubiquinone oxidoreductase, membrane subunit M | |||||
| * | ? | CP009273 | = 1203261 | 100 (1.090) | 5 (0.060) | 3/236 | 6.7 | 6.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 64 (0.800) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 4532507 | 46 (0.500) | 4 (0.050) | 3/250 | 7.0 | 6.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 73 (0.860) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 499572 | 77 (0.840) | 5 (0.060) | 3/266 | 7.3 | 5.9% | coding (581/1221 nt) | fsr | putative fosmidomycin efflux system protein |
| ? | CP009273 | = 1512466 | 83 (0.920) | coding (123/450 nt) | ydcZ | DUF606 family inner membrane protein | |||||
| * | ? | CP009273 | 200543 = | 122 (1.340) | 3 (0.030) | 3/264 | 7.3 | 2.7% | coding (709/1149 nt) | lpxB | tetraacyldisaccharide‑1‑P synthase |
| ? | CP009273 | = 1354789 | 98 (1.090) | coding (377/1419 nt) | puuA | glutamate‑‑putrescine ligase | |||||