mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,402,596 | 0 | T | G | 28.3% | 96.4 / 22.7 | 60 | V131V (GTT→GTG) | yjfM | DUF1190 family protein |
| * | CP009273 | 4,402,598 | 0 | C | G | 24.6% | 135.1 / 13.8 | 61 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 1,828,727 | 0 | G | C | 23.6% | 119.0 / 11.4 | 55 | E119Q (GAA→CAA) | ydjY | putative ferrodoxin‑like lipoprotein |
| * | CP009273 | 2,170,734 | 0 | G | T | 22.5% | 158.7 / 14.1 | 80 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Marginal new junction evidence (lowest skew 10 of 202 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 377428 = | NA (NA) | 34 (0.320) | 24/258 | 5.8 | NA | coding (299/906 nt) | insD1 | IS2 transposase TnpB |
| ? | CP009273 | 377513 = | NA (NA) | coding (384/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 1390891 | NA (NA) | 26 (0.250) | 22/254 | 6.2 | 32.5% | coding (559/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | 1422427 = | 57 (0.520) | noncoding (625/1196 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 270236 = | NA (NA) | 26 (0.250) | 22/254 | 6.2 | NA | noncoding (31/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270270 = | NA (NA) | noncoding (65/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | 2721617 = | NA (NA) | 27 (0.260) | 21/254 | 6.4 | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 220697 | NA (NA) | 36 (0.330) | 21/262 | 6.6 | NA | noncoding (440/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 220750 | NA (NA) | noncoding (493/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 1203261 | 87 (0.790) | 17 (0.180) | 17/236 | 7.0 | 17.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 82 (0.850) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 223172 | 20 (0.180) | 22 (0.210) | 17/254 | 7.5 | 53.7% | noncoding (927/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 220544 = | NA (NA) | 24 (0.220) | 18/266 | 7.6 | NA | noncoding (287/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 220571 = | NA (NA) | noncoding (314/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 220916 | NA (NA) | 17 (0.160) | 16/258 | 8.0 | NA | noncoding (659/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 221003 | NA (NA) | noncoding (746/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 2336036 = | 91 (0.830) | 18 (0.170) | 16/264 | 8.2 | 17.1% | coding (1613/3753 nt) | yfaL | adhesin |
| ? | CP009273 | 2336142 = | 85 (0.780) | coding (1507/3753 nt) | yfaL | adhesin | |||||