mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,470,495 | 0 | T | A | 28.8% | 71.8 / 39.4 | 52 | Q205L (CAG→CTG) | dsdC | dsd operon activator; autorepressor |
| * | CP009273 | 2,470,497 | 0 | T | A | 28.8% | 74.8 / 39.8 | 52 | R204S (AGA→AGT) ‡ | dsdC | dsd operon activator; autorepressor |
| * | CP009273 | 2,470,499 | 0 | T | A | 28.8% | 74.2 / 39.3 | 52 | R204* (AGA→TGA) ‡ | dsdC | dsd operon activator; autorepressor |
| * | CP009273 | 2,470,501 | 0 | T | G | 28.8% | 76.3 / 40.5 | 52 | D203A (GAC→GCC) | dsdC | dsd operon activator; autorepressor |
| * | CP009273 | 2,470,493 | 0 | C | A | 27.8% | 92.7 / 38.8 | 54 | A206S (GCA→TCA) | dsdC | dsd operon activator; autorepressor |
| * | CP009273 | 1,443,307 | 0 | T | A | 22.7% | 171.6 / 50.7 | 89 | intergenic (+32/+26) | feaB/tynA | phenylacetaldehyde dehydrogenase/tyramine oxidase, copper‑requiring |
| * | CP009273 | 2,048,459 | 0 | C | A | 20.8% | 221.1 / 47.8 | 96 | intergenic (+19/‑83) | shiA/amn | shikimate transporter/AMP nucleosidase |
| Marginal new junction evidence (lowest skew 10 of 192 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 270331 | NA (NA) | 30 (0.290) | 25/258 | 4.7 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 270426 | NA (NA) | noncoding (221/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 2060305 | 32 (0.290) | 29 (0.280) | 24/258 | 4.9 | 48.7% | noncoding (530/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2060400 | NA (NA) | noncoding (435/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 270078 = | NA (NA) | 27 (0.260) | 24/260 | 4.9 | NA | noncoding (783/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 270216 = | NA (NA) | noncoding (11/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | = 2723645 | NA (NA) | 29 (0.280) | 21/254 | 5.4 | NA | noncoding (872/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon |
| ? | CP009273 | = 2723688 | NA (NA) | noncoding (829/1542 nt) | rrsG | 16S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 2060047 = | 29 (0.270) | 23 (0.220) | 21/260 | 5.5 | 45.2% | noncoding (788/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2095785 = | NA (NA) | noncoding (640/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 377428 = | NA (NA) | 33 (0.320) | 21/260 | 5.5 | NA | coding (299/906 nt) | insD1 | IS2 transposase TnpB |
| ? | CP009273 | 377513 = | NA (NA) | coding (384/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | 221086 = | NA (NA) | 27 (0.260) | 19/254 | 5.9 | 74.2% | noncoding (829/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | 221129 = | 10 (0.090) | noncoding (872/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | = 2060348 | 3 (0.030) | 34 (0.310) | 20/270 | 6.0 | 91.9% | noncoding (487/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2095893 | NA (NA) | noncoding (532/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 1391083 | NA (NA) | 22 (0.210) | 19/260 | 6.0 | 21.6% | coding (751/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | 1422407 = | 83 (0.760) | noncoding (645/1196 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 270329 | NA (NA) | 34 (0.310) | 20/270 | 6.0 | NA | noncoding (124/335 nt) | IS911 | repeat region |
| ? | CP009273 | = 270374 | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||