| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,435,732 | (A)5→4 | intergenic (‑113/+28) | uspF ← / ← ompN | nucleotide binding filament protein/outer membrane porin N |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,435,728 | 0 | A | . | 100.0% | 50.7 / NA | 12 | intergenic (‑109/+32) | uspF/ompN | nucleotide binding filament protein/outer membrane porin N |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (9/3); total (9/3) | |||||||||||
TAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGT > NC_000913/1435652‑1435801 | tAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGaaaag < 1:263947/81‑2 (MQ=255) aCGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGaaaagc < 2:263948/80‑3 (MQ=255) gtgtAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCag > 1:263966/1‑80 (MQ=255) aCGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGAtt > 1:263972/1‑79 (MQ=255) ttttAATTTAGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAAc > 2:263968/1‑80 (MQ=255) aGATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTa > 2:263973/1‑79 (MQ=255) gATCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTaaa < 1:263950/80‑1 (MQ=255) tCAAAGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCg < 1:263951/81‑1 (MQ=255) aaaGGAGGAAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGa > 1:263971/1‑80 (MQ=255) ggaggaAGAATAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACaa > 2:263974/1‑80 (MQ=255) gaaTAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCg > 2:263970/1‑81 (MQ=255) aTAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCgg > 1:263981/1‑80 (MQ=255) aTAAGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGt < 1:263952/81‑1 (MQ=255) aaGCAG‑AAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCgg > 1:263969/1‑78 (MQ=255) | TAACGCCAGATGACACTTTTTGTGTAATGACGGAGTTCACATTTTTAATTTAGATCAAAGGAGGAAGAATAAGCAGAAAAAGCCCGCCATAACAGCGGGCAGGAGGATTTAGAACTGATAAACCAGACCTAAAGCGACAATATCATCGGT > NC_000913/1435652‑1435801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |