| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,941,650 | A→G | intergenic (‑323/‑158) | yieP ← / → rrsC | putative transcriptional regulator YieP/16S ribosomal RNA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,941,650 | 0 | A | G | 100.0% | 51.0 / NA | 17 | intergenic (‑323/‑158) | yieP/rrsC | putative transcriptional regulator YieP/16S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (10/7); total (10/7) | |||||||||||
GGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC > NC_000913/3941575‑3941725 | ggCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAagagcaa < 2:730892/81‑1 (MQ=37) cAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAagagcaaag < 2:730893/81‑1 (MQ=255) agagAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAagagcaaagc < 2:730894/81‑1 (MQ=255) agaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCgg > 1:730917/1‑81 (MQ=255) agaAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCgg < 1:730895/81‑1 (MQ=255) aGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCGGCACt < 1:730896/81‑1 (MQ=255) gCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCGGCACTg > 2:730914/1‑81 (MQ=255) aaaaTAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATTCACACCCCGCGCCGCTGAGAAAGAGCAAAGCGGCACTGctc < 1:730897/81‑1 (MQ=255) aaatGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCGGCACTGCTCTTTaa > 1:730921/1‑81 (MQ=255) tGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCGGCACTGCTCTTTAACAATTTa > 2:730922/1‑81 (MQ=255) tGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCGGCACTGCTCTTTAACAATTTa > 1:730919/1‑81 (MQ=255) gACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCGGCACTGCTCTTTAACAATTTa < 1:730898/80‑1 (MQ=255) tAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACaa > 2:730920/1‑81 (MQ=255) ttatGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTc < 1:730899/81‑1 (MQ=18) tGCACACCCCGCGCCGCTGAGAAAGAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGa < 1:730900/80‑1 (MQ=21) ccGCGCCGCTGAGAAAGAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGa < 2:730901/81‑1 (MQ=18) gcgcCGCTGAGAAAGAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAtt > 1:730923/1‑81 (MQ=18) ccgcTGAGAAAGAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:730928/1‑80 (MQ=21) gcTGAGAAAGAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTaa > 1:730924/1‑81 (MQ=18) agaAAGAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTc > 2:730957/1‑81 (MQ=18) | GGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAAAAAGCAAAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC > NC_000913/3941575‑3941725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |