| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,073,996 | Δ1 bp | coding (16/1149 nt) | rutA ← | pyrimidine oxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,073,993 | 0 | G | . | 100.0% | 67.0 / NA | 17 | coding (19/1149 nt) | rutA | pyrimidine oxygenase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (4/13); total (4/13) | |||||||||||
CAGCCGTTGTTGCCAATAGGTACGAATACGCCAATTTTCATCATCAACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGACGGGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCAAAGCGGATGCCAGTTTTTAAAAAGT > NC_000913/1073914‑1074068 | cagccGTTGTTGCCAATAGGTACGAATACGCCAATTTTCATCATCAACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGACgg < 2:197363/81‑1 (MQ=255) gccGTTGTTGCCAATAGGTACGAATACGCCAATTTTCATCATCAACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGACgggc < 1:197364/81‑2 (MQ=255) gttgCCAATAGGTACGAATACGCCAATTTTCATCATCAACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGc < 2:197365/80‑1 (MQ=255) ttgCCAATAGGTACGAATACGCCAATTTTCATCATCAACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCAt < 2:197366/81‑1 (MQ=255) tAGGTACGAATACGCCAATTTTCATCATCAACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCa > 2:197396/1‑80 (MQ=255) gCCAATTTTCATCATCAACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGcc < 1:197367/81‑1 (MQ=255) gCCAATTTTCATCATCAACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCATTTCAGcc < 2:197368/81‑1 (MQ=255) catcatcaACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTg < 1:197369/80‑1 (MQ=255) atcatcaACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGc < 2:197370/81‑1 (MQ=255) atccTCTCTTCGTCTCGTAAAGTGAAAGTCATAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGtt < 2:197371/78‑1 (MQ=255) tctTCGTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCAAAg > 1:197394/1‑81 (MQ=255) ttCGTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCaaa < 1:197372/78‑1 (MQ=255) agTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCAAAGc < 2:197373/77‑1 (MQ=255) gTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCAAAGCGGAt > 1:197395/1‑81 (MQ=255) gTCTCGTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCAAAGCGGAt < 2:197374/81‑1 (MQ=255) gTAAAGTGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCAAAGCGGATGCCAg < 2:197375/81‑1 (MQ=255) tGAAAGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCAAAGCGGATGCCAGttttt > 2:197393/1‑80 (MQ=255) aaaGTCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCAAAGCGGATGCCAGTTTTTaa < 1:197376/80‑1 (MQ=255) tCAGAC‑GGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCAAAGCGGATGCCAGTTTTTAAAAAGt < 1:197377/81‑1 (MQ=255) | CAGCCGTTGTTGCCAATAGGTACGAATACGCCAATTTTCATCATCAACCTCTCTTCGTCTCGTAAAGTGAAAGTCAGACGGGGCGCTGCATCCTGCATATCCTTTTCAGCCGCGTATTGGCTTGTTTGCAAAGCGGATGCCAGTTTTTAAAAAGT > NC_000913/1073914‑1074068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |