| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,087,850 | (T)5→4 | coding (2008/2019 nt) | pgaB ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase and beta‑1,6 glycoside hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,087,846 | 0 | T | . | 100.0% | 76.9 / NA | 19 | coding (1/1326 nt) coding (2012/2019 nt) | pgaC pgaB | poly‑N‑acetyl‑D‑glucosamine synthase subunit PgaC poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine N‑deacetylase and beta‑1,6 glycoside hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (8/11); total (8/11) | |||||||||||
AGAGTGAAAGTACGCTACGCATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCATTTTTCGGATACCAGGCTGTTGAAAACTCAGGACGAATAAGGTCTATTTCAGGTTGGTTATGCAGAAAATTGT > NC_000913/1087769‑1087918 | agagTGAAAGTACGCTACGCATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCAtttt > 2:199519/1‑81 (MQ=255) aaaGTACGCTACGCATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATa > 2:199521/1‑81 (MQ=255) aGTACGCTACGCATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATAcc < 1:199501/81‑1 (MQ=255) gTACGCTACGCATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATACCa < 2:199502/81‑1 (MQ=255) tacgctacgcATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATACCAg < 1:199503/81‑1 (MQ=255) cgctacgcATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATACCAgg < 1:199504/80‑1 (MQ=255) gctacgcATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATACCAGGCt > 2:199524/1‑81 (MQ=255) gctacgcATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATACCAGGCt > 2:199523/1‑81 (MQ=255) gctacgcATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATACCAGGCt < 2:199505/81‑1 (MQ=255) gcATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATACCAGGCTGTTGa < 2:199506/81‑1 (MQ=255) tAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATACCAGGCTGTTGaaaa > 1:199525/1‑81 (MQ=255) cATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCA‑TTTTCGGATACCAGGCTGTTGAAAACTCAGGACGa < 2:199507/81‑1 (MQ=255) taAAAAACGATACGATGCGATTAATCA‑TTTTCGGATACCAGGCTGTTGAAAACTCAGGACGAATAAGGTCTATTTCAggtt > 1:199533/1‑81 (MQ=255) acgatacgatGCGATTAATCA‑TTTTCGGATACCAGGCTGTTGAAAACTCAGGACGAATAAGGTCTATTTCAGGTTGGTTAt > 1:199530/1‑81 (MQ=255) acgatacgatGCGATTAATCA‑TTTTCGGATACCAGGCTGTTGAAAACTCAGGACGAATAAGGTCTATTTCAGGTTGGTTAt < 1:199508/81‑1 (MQ=255) cgatacgatGCGATTAATCA‑TTTTCGGATACCAGGCTGTTGAAAACTCAGGACGAATAAGGTCTATTTCAGGTTGGTTATg < 1:199509/81‑1 (MQ=255) gatGCGATTAATCA‑TTTTCGGATACCAGGCTGTTGAAAACTCAGGACGAATAAGGTCTATTTCAGGTTGGTTATGCAGaaa < 1:199510/81‑1 (MQ=255) gatGCGATTAATCA‑TTTTCGGATACCAGGCTGTTGAAAACTCAGGACGAATAAGGTCTATTTCAGGTTGGTTATGCAGaa > 2:199526/1‑80 (MQ=255) atGCGATTAATCA‑TTTTCGGATACCAGGCTGTTGAAAACTCAGGACGAATAAGGTCTATTTCAGGTTGGTTATGCAGaaaa < 1:199511/81‑1 (MQ=255) gATTAATCA‑TTTTCGGATACCAGGCTGTTGAAAACTCAGGACGAATAAGGTCTATTTCAGGTTGGTTATGCAGAAAATTGt > 1:199529/1‑81 (MQ=255) | AGAGTGAAAGTACGCTACGCATAGGGGTATGCATAACACCAGACATAATATAAAAAACGATACGATGCGATTAATCATTTTTCGGATACCAGGCTGTTGAAAACTCAGGACGAATAAGGTCTATTTCAGGTTGGTTATGCAGAAAATTGT > NC_000913/1087769‑1087918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |