| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,651,979 | Δ1 bp | pseudogene (468/1197 nt) | intQ → | Qin prophage; putative defective integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,651,977 | 0 | T | . | 100.0% | 42.1 / NA | 11 | pseudogene (466/1197 nt) | intQ | Qin prophage; putative defective integrase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (3/8); total (3/8) | |||||||||||
ACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTATCCGT > NC_000913/1651899‑1652048 | actgtaaATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGtt < 2:271616/80‑1 (MQ=255) ctgtaaATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGtt > 1:271633/1‑79 (MQ=255) taaATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCG‑TTAAggg < 2:271617/81‑1 (MQ=255) taatTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCG‑TTAAGGGGAtc < 1:271618/81‑1 (MQ=255) atTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCG‑TTAAGGGGAtctc < 2:271619/81‑1 (MQ=255) tGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCG‑TTAAGGGGATCTCGCCAtt < 2:271620/81‑1 (MQ=255) aCAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCG‑TTAAGGGGATCTCGCCATTaa < 1:271621/81‑1 (MQ=255) aaCGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCG‑TTAAGGGGATCTCGCCATTAAAGGAAt < 1:271622/78‑1 (MQ=255) aaCGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCG‑TTAAGGGGATCTCGCCATTAAAGGAATc > 1:271641/1‑79 (MQ=255) ggTGTTGATAACGGTTACCTGGCAGATAATCCG‑TTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCctc > 1:271640/1‑81 (MQ=255) gTTACCTGGCAGATAATCCG‑TTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGgaaga < 2:271623/81‑1 (MQ=255) cTGGCAGATAATCCG‑TTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTa > 2:271638/1‑81 (MQ=255) aGATAATCCG‑TTAAGGGGATCTAGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTATCCGt < 1:271624/81‑1 (MQ=255) | ACTGTAAATAATTACATGACAAATCTTAACGCCGTGTTCCAGTTTGGTGTTGATAACGGTTACCTGGCAGATAATCCGTTTAAGGGGATCTCGCCATTAAAGGAATCAAGAACCATTCCGGATCCTCTTTCGCGGGAAGAATTTATCCGT > NC_000913/1651899‑1652048 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |