Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,709,108	(A)6→5	coding (2190/2223 nt)	rsxC →	SoxR [2Fe‑2S] reducing system protein RsxC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,709,103	0	A	.	100.0%	77.0 / NA	19	coding (2185/2223 nt)	rsxC	SoxR [2Fe‑2S] reducing system protein RsxC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (7/12);  total (7/12)

ACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCA  >  NC_000913/1709024‑1709176                                                                                |                                                                          aCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaa                                                                          <  1:278399/81‑1 (MQ=255) aCAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaa                                                                          <  2:278398/81‑1 (MQ=255)  cAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaa                                                                          >  1:278425/1‑80 (MQ=255)   aGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCaaaa                                                                        <  1:278400/81‑1 (MQ=255)                  cAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCcagcag                                                          >  2:278427/1‑79 (MQ=255)                     aagaaCAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGt                                                     >  1:278424/1‑81 (MQ=255)                                     gcgcAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTCGTAAACGAGGACTaa                                     <  2:278401/81‑1 (MQ=255)                                      cgcAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTaaa                                    <  1:278402/81‑1 (MQ=255)                                       gcAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAAt                                   <  1:278403/81‑1 (MQ=255)                                         aaaGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATgg                                 >  1:278429/1‑81 (MQ=255)                                          aaGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGt                                <  1:278404/81‑1 (MQ=255)                                            gCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTAt                              >  2:278428/1‑81 (MQ=255)                                             cGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTAtt                             <  2:278405/81‑1 (MQ=255)                                              ggCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTc                            <  2:278406/81‑1 (MQ=255)                                                  gTTGCCGCGGCTATTGCCCGCGCTCAGGCC‑AAAGAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGaa                        <  2:278407/81‑1 (MQ=255)                                                      ccGCGGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAtagc                    <  2:278408/81‑1 (MQ=255)                                                       cgcgGCTATTGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAtagct                   <  2:278409/81‑1 (MQ=255)                                                               ttGCCCGCGCTAAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTcccc           <  1:278410/81‑1 (MQ=255)                                                                tGCCCGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCt          >  1:278426/1‑81 (MQ=255)                                                                  cccGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCtt         <  2:278412/80‑1 (MQ=255)                                                                  cccGCGCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCtt         <  1:278411/80‑1 (MQ=255)                                                                    cgcgCTCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTtata      >  2:278434/1‑81 (MQ=255)                                                                         tCAGGCC‑AAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCa  >  2:278433/1‑80 (MQ=255)                                                                                |                                                                          ACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCCCCTTATACCCA  >  NC_000913/1709024‑1709176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑