| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,799,179 | Δ1 bp | intergenic (‑237/+47) | pheS ← / ← pheM | phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,799,177 | 0 | T | . | 100.0% | 55.4 / NA | 14 | intergenic (‑235/+49) | pheS/pheM | phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (7/7); total (7/7) | |||||||||||
GGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAG > NC_000913/1799098‑1799238 | ggCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCtt > 1:289605/1‑81 (MQ=255) gCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCt < 1:289588/79‑1 (MQ=255) cGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGgc < 2:289589/81‑1 (MQ=255) aTTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGt > 1:289619/1‑81 (MQ=255) ttACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGtt > 1:289613/1‑81 (MQ=255) gCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCAc < 2:289590/81‑1 (MQ=255) aTTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAg > 2:289609/1‑81 (MQ=255) tttCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGcct > 2:289615/1‑81 (MQ=255) aaaaCGCGCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGcctcct < 1:289591/80‑1 (MQ=255) cgcgCATACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGAtt < 2:289592/81‑1 (MQ=255) aTACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGt < 1:289594/81‑1 (MQ=255) aTACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGt < 2:289593/81‑1 (MQ=255) aTACAAAAAAAGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGt > 2:289620/1‑81 (MQ=255) aaaaaaGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTa > 1:289611/1‑80 (MQ=255) aaaaaGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTa > 2:289616/1‑79 (MQ=255) aaaaGCCTCCACTGGGAGGC‑TTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAg < 1:289595/81‑1 (MQ=255) | GGCTGCGACAATTACACCTGATGAGACAGGCTTTTTATTTTTCAAAACGCGCATACAAAAAAAGCCTCCACTGGGAGGCTTTCAGGCGCTGTTTTCCGTTTCTCTTCTCACGCGCTAGCCTCCTGGATTCAGGTGCTAAAG > NC_000913/1799098‑1799238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |