| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,946,207 | (T)6→5 | intergenic (‑27/‑44) | yobI ← / → yebB | uncharacterized protein YobI/putative papain‑like amidase YebB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,946,202 | 0 | T | . | 90.9% | 33.6 / ‑2.7 | 11 | intergenic (‑22/‑49) | yobI/yebB | uncharacterized protein YobI/putative papain‑like amidase YebB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base . (7/3); minor base G (0/1); total (7/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.64e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATG > NC_000913/1946126‑1946278 | gCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTG‑AAAAATAAAttttta > 1:308948/1‑80 (MQ=255) ttttAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTG‑AAAAATAAA‑TTTTTATGCTAt < 1:308938/80‑1 (MQ=255) tACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTG‑AAAAATAAA‑TTTTTATGCTATTACGTATAtt > 1:308955/1‑81 (MQ=255) tACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTG‑AAAAATAAA‑TTTTTATGCTATTACGTATAtt > 2:308949/1‑81 (MQ=255) aaTGCGTAATAAAAATATACATTGCGCCTCCTG‑AAAAATAAA‑TTTTTATGCTATTACGTATATTTGTATCTATTTCAATgg < 1:308939/81‑1 (MQ=255) cGTAATAAAAATATACATTGCGCCTCCTG‑AAAAATAAA‑TTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAAt < 1:308940/80‑1 (MQ=255) gTAATAAAAATATACATTGCGCCTCCTG‑AAAAATAAA‑TTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGa > 1:308951/1‑81 (MQ=255) aaaaTATACATTGCGCCTCCTG‑AAAAAT‑AAGTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACg < 2:308941/80‑1 (MQ=255) aCATTGCGCCTCCTG‑AAAAATAAA‑TTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAatat > 1:308957/1‑80 (MQ=255) ttGCGCCTCCTG‑AAAAATAAA‑TTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATattaat > 2:308953/1‑81 (MQ=255) cctcctG‑AAAAATAAA‑TTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTAccc > 2:308947/1‑81 (MQ=255) cctgaaaaaTAAA‑TTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCctgc > 2:308954/5‑81 (MQ=255) aaataaa‑tTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAata < 2:308942/81‑1 (MQ=255) ataaa‑tTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATg < 2:308943/81‑1 (MQ=255) | GCAAATATTTTAATATTACATATTCAGTGAAGAAATGCGTAATAAAAATATACATTGCGCCTCCTGAAAAAATAAATTTTTTATGCTATTACGTATATTTGTATCTATTTCAATGGAATGACAACGTGAATATTAATTACCCTGCTGAATATG > NC_000913/1946126‑1946278 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |