| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,978,270 | Δ1 bp | intergenic (‑73/+248) | flhD ← / ← insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,978,267 | 0 | C | . | 100.0% | 81.4 / NA | 20 | intergenic (‑70/+251) | flhD/insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (12/8); total (12/8) | |||||||||||
AGGTATGCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATAT > NC_000913/1978188‑1978342 | aGGTATGCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGcc < 1:313609/81‑1 (MQ=255) ggTATGCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGccc < 1:313610/81‑1 (MQ=255) tGCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGcccggt < 2:313611/80‑4 (MQ=255) cATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTaaa < 2:313612/81‑1 (MQ=255) attattCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTaaa > 1:313635/1‑80 (MQ=255) ttattCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTaaaaa < 1:313613/81‑1 (MQ=255) acccaGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAg < 1:313614/81‑1 (MQ=255) aaTAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCAt > 2:313632/1‑78 (MQ=255) aTAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGa < 2:313615/81‑1 (MQ=255) tAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGaa > 2:313637/1‑81 (MQ=255) aaCCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGaa > 1:313644/1‑80 (MQ=255) ccAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAg < 2:313616/81‑1 (MQ=255) ttATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCt > 1:313650/1‑81 (MQ=255) tGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGc > 1:313633/1‑80 (MQ=255) cgctttCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAAt < 2:313617/78‑1 (MQ=255) tCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAg > 2:313646/1‑79 (MQ=255) tCACCGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAg > 1:313634/1‑79 (MQ=255) ccGCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGaa > 1:313640/1‑81 (MQ=255) gCACCCCGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAac > 2:313645/1‑80 (MQ=255) cGTGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCttt < 1:313618/81‑1 (MQ=255) atGATGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCtttt < 1:313619/80‑1 (MQ=255) aTGTCGCCGGGAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTgg > 1:313643/1‑81 (MQ=255) gggAAG‑CCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAatat > 1:313642/1‑81 (MQ=255) | AGGTATGCATTATTCCCACCCAGAATAACCAACTTTATTTTTATGCGGTTTCACCGCACCCCGTGATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATAT > NC_000913/1978188‑1978342 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |