| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,072,377 | (A)5→4 | coding (839/3120 nt) | flu → | CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,072,373 | 0 | A | . | 100.0% | 72.5 / NA | 18 | coding (835/3120 nt) | flu | CP4‑44 prophage; self recognizing antigen 43 (Ag43) autotransporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (7/11); total (7/11) | |||||||||||
GGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTACAGCCAC > NC_000913/2072299‑2072449 | ggggATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCaaaacg < 2:326589/80‑3 (MQ=255) ggATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACgggg < 2:326590/81‑1 (MQ=255) aTACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGgt < 1:326591/81‑1 (MQ=255) ccAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGtgtg > 1:326633/1‑81 (MQ=255) cacaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAAt < 2:326592/80‑1 (MQ=255) acaACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAATac > 2:326628/1‑81 (MQ=255) cggcggTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAATaccacc < 2:326593/81‑1 (MQ=255) ggcggTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCg > 2:326635/1‑81 (MQ=255) gTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTaa > 2:326641/1‑81 (MQ=255) tACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTAAt > 2:326631/1‑81 (MQ=255) aGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAg < 2:326594/81‑1 (MQ=255) aGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAg < 2:326595/81‑1 (MQ=255) ttgtGAACAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGc < 1:326596/80‑1 (MQ=255) aaCAGTGACGGCTGGCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTgg < 2:326597/81‑1 (MQ=255) gCAGATTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTAc < 2:326598/80‑1 (MQ=255) aGATTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTACAGc > 2:326636/1‑81 (MQ=255) aGATTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTACAGc > 2:326647/1‑81 (MQ=255) aTTGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTACAGCCa < 2:326599/81‑1 (MQ=255) ttGTC‑AAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTACAGCCAc < 1:326600/81‑1 (MQ=255) | GGGGATACCAGTATGTGCACAACGGCGGTACAGCGTCTGACACTGTTGTGAACAGTGACGGCTGGCAGATTGTCAAAAACGGGGGTGTGGCCGGGAATACCACCGTTAATCAGAAGGGCAGACTGCAGGTGGACGCCGGTGGTACAGCCAC > NC_000913/2072299‑2072449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |