| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 248,373 | (C)5→4 | pseudogene (1698/1713 nt) | lfhA ← | flagellar system protein, promoterless fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 248,369 | 0 | C | . | 100.0% | 85.0 / NA | 21 | pseudogene (1702/1713 nt) | lfhA | flagellar system protein, promoterless fragment |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (15/6); total (15/6) | |||||||||||
GCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAAC > NC_000913/248292‑248442 | gCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGccc > 1:52732/1‑80 (MQ=255) ccTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGcccc < 2:52704/80‑1 (MQ=255) aaCGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGccccataa < 2:52705/80‑5 (MQ=255) tAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCa < 1:52706/81‑1 (MQ=255) aGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCaa > 2:52737/1‑81 (MQ=255) ggACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAAc > 1:52740/1‑81 (MQ=255) ggATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTc > 1:52736/1‑79 (MQ=255) gATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAg > 1:52746/1‑81 (MQ=255) gCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATc < 2:52707/81‑1 (MQ=255) aCGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCa < 2:52708/80‑1 (MQ=255) aCGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCAc > 1:52730/1‑81 (MQ=255) gccgcATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACtt > 2:52739/1‑81 (MQ=255) ccgcATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTc < 1:52709/81‑1 (MQ=255) gcATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGt > 2:52734/1‑81 (MQ=255) ccGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTtata > 1:52753/1‑81 (MQ=255) cGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTtata < 2:52710/80‑1 (MQ=255) cGGCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATAc > 2:52742/1‑81 (MQ=255) ggCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATAc > 1:52741/1‑80 (MQ=255) gCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGa > 1:52744/1‑81 (MQ=255) gCAGTTGTGCACCAATGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGa > 2:52738/1‑81 (MQ=255) aTGCTGGATACTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGcc > 1:52752/1‑81 (MQ=255) cTTACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCaaa > 2:52768/1‑81 (MQ=255) ttACATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCaaa > 1:52749/1‑80 (MQ=255) cATCAACG‑CCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAaacaac < 2:52711/81‑1 (MQ=255) | GCCTGAACGGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCAGTTGTGCACCAATGCTGGATACTTACATCAACGCCCCCATAATCTTCAACTCCAGCTCATCCGGCACTTCGTTATACGACAGCACATGCAGCCCCGGCGCAAACAAC > NC_000913/248292‑248442 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |