Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 2,517,367 | (A)5→4 | coding (466/2190 nt) | pdeA ← | putative c‑di‑GMP phosphodiesterase PdeA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 2,517,363 | 0 | A | . | 100.0% | 50.9 / NA | 13 | coding (470/2190 nt) | pdeA | putative c‑di‑GMP phosphodiesterase PdeA |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (7/6); total (7/6) |
GAAAAGCATGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTAGCGGGAAATCAAAGAAGCTCCCCACAAGATACATGCTGCATTTGATGCCGATCGGC > NC_000913/2517284‑2517437 | gAAAAGCATGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGa > 1:398513/1‑80 (MQ=255) gAAAAGCATGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGa > 2:398521/1‑80 (MQ=255) aaaGCATGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGaaaa < 1:398491/81‑1 (MQ=255) ttgtAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCG‑AAAAGGTGGat < 2:398492/80‑1 (MQ=255) gtAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCG‑AAAAGGTGGatat < 1:398493/80‑1 (MQ=255) aTCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCG‑AAAAGGTGGATATCtt > 2:398517/1‑79 (MQ=255) aGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCG‑AAAAGGTGGATATCTTTAGCGGGaaa > 1:398512/1‑81 (MQ=255) gCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCG‑AAAAGGTGGATATCTTTAGCGGGAAAt < 1:398494/81‑1 (MQ=255) cGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCG‑AAAAGGTGGATATCTTTAGCGGGAAATc < 2:398495/81‑1 (MQ=255) aGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCG‑AAAAGGTGGATATCTTTAGCGGGAAATCAAAGAAGc > 1:398520/1‑81 (MQ=255) aCCGTGAAAATGGCATCCGCATCGCCG‑AAAAGGTGGATATCTTTAGCGGGAAATCAAAGAAGCTCCCCACAAGATACAtgc > 2:398523/1‑81 (MQ=255) aTCCGCATCGCCG‑AAAAGGTGGATATCTTTAGCGGGAAATCAAAGAAGCTCCCCACAAGATACATGCTGCATTTGATGcc > 1:398526/1‑80 (MQ=255) aTCCGCATCGCCG‑AAAAGGTGGATATCTTTAGCGGGAAATCAAAGAAGCTCCCCACAAGATACATGCTGCATTTGATGCCg < 2:398496/81‑1 (MQ=255) cGCATCGCCG‑AAAAGGTGGATATCTTTAGCGGGAAATCAAAGAAGCTCCCCACAAGATACATGCTGCATTTGATGCCGATc > 2:398524/1‑81 (MQ=255) gCATCGCCG‑AAAAGGTGGATATCTTTAGCGGGAAATCAAAGAAGCTCCCCACAAGATACATGCTGCATTTGATGCCGATCg > 2:398519/1‑81 (MQ=255) aTCGCCG‑AAAAGGTGGATATCTTTAGCGGGAAATCAAAGAAGCTCCCCACAAGATACATGCTGCATTTGATGCCGATCGGc < 1:398497/81‑1 (MQ=255) | GAAAAGCATGTTGTAAATCAGCACAGCGGTGAAAAGGCTTAGCAAATCAACGACCGTGAAAATGGCATCCGCATCGCCGAAAAAGGTGGATATCTTTAGCGGGAAATCAAAGAAGCTCCCCACAAGATACATGCTGCATTTGATGCCGATCGGC > NC_000913/2517284‑2517437 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |