Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,779,491	(T)8→9	intergenic (‑190/‑126)	ydiP ← / → ydiQ	putative DNA‑binding transcriptional regulator YdiP/putative electron transfer flavoprotein subunit YdiQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,779,483	1	.	T	100.0%	31.7 / NA	10	intergenic (‑182/‑134)	ydiP/ydiQ	putative DNA‑binding transcriptional regulator YdiP/putative electron transfer flavoprotein subunit YdiQ
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base T (6/4);  total (6/4)

ATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCA‑TTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTA  >  NC_000913/1779406‑1779555                                                                               |                                                                         attTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCA‑ttt                                                                       >  1:287076/1‑81 (MQ=255)      cacTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCA‑ttttttt                                                                   <  2:287057/80‑1 (MQ=255)        cTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCA‑tttttttttg                                                                >  1:287083/1‑79 (MQ=255)                aaGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGAttg                                                         >  1:287073/1‑81 (MQ=255)                          ggTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAgg                                                >  1:287077/1‑80 (MQ=255)                                ggAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAg                                         >  2:287069/1‑81 (MQ=255)                                       cTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTc                                  <  2:287058/81‑1 (MQ=255)                                          tatTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCg                                <  2:287059/80‑1 (MQ=255)                                            ttGCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTc                              <  1:287060/80‑1 (MQ=255)                                              gCCGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGa                            >  1:287081/1‑80 (MQ=255)                                                cGCAAATTGCACTTTTGTTTTAGCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGaaaa                         <  2:287061/81‑1 (MQ=255)                                                                      gCGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCacac    >  2:287089/1‑80 (MQ=255)                                                                       cGATCGCATTTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTa  >  1:287079/1‑81 (MQ=255)                                                                               |                                                                         ATTTACACTGAATGCAAGATTGTACGGTCATGGAATAACTATATTGCCGCAAATTGCACTTTTGTTTTAGCGATCGCA‑TTTTTTTTGCAAGATTGTTGGCAAGGAAAACAGCTTGCTCCGTCGAAAACCCCGCACCGCTATCGCACACTA  >  NC_000913/1779406‑1779555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑