| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,187,697 | (A)6→7 | pseudogene (266/2434 nt) | yqiG → | putative outer membrane usher protein YqiG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,187,691 | 1 | . | A | 95.2% | 67.9 / ‑3.2 | 21 | pseudogene (260/2434 nt) | yqiG | putative outer membrane usher protein YqiG |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base A (10/10); total (11/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGTATTAATTGATAACCAAACTGCAGTTTGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTG‑AAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATC > NC_000913/3187612‑3187760 | ggTATTAATTGATAACCAAACTGCAGTTTGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTg < 2:531425/80‑1 (MQ=255) aTTGATAACCAAACTGCAGTTTGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTG‑aaaaaaac < 2:531426/81‑3 (MQ=255) gATAACCAAACTGCAGTTTGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTG‑aaaaaaactc < 2:531428/80‑5 (MQ=255) gATAACCAAACTGCAGTTTGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTG‑aaaaaaactc < 2:531427/80‑5 (MQ=255) aCTGCAGTTTGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCt > 2:531453/1‑81 (MQ=255) gCAGTTTGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTGAGGATTTTTTTG‑AAAAAACCTCACCAAACCCTGAt > 1:531457/1‑81 (MQ=255) aGTTTGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCg < 1:531430/81‑1 (MQ=255) ttGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATg > 1:531463/1‑81 (MQ=255) gACACCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGgttgt > 1:531462/1‑80 (MQ=255) acacCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGgttgtt < 1:531431/80‑1 (MQ=255) acCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTAcc > 1:531449/1‑81 (MQ=255) cAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCt < 2:531431/81‑1 (MQ=255) agCAATTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATc > 2:531454/1‑81 (MQ=255) gCAATTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATc > 2:531468/1‑80 (MQ=255) aaTTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCgaa < 1:531434/81‑1 (MQ=255) aaTTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCga > 2:531457/1‑80 (MQ=255) aaTTAACATTATTAGGATTTACTGATGAA‑TTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCgaaa < 2:531432/81‑1 (MQ=255) aTTAACATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCgaaa < 2:531434/81‑1 (MQ=255) aCATTATTAGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCgaaaaag < 2:531435/80‑1 (MQ=255) ttattaGGATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCgaaaaagaaaa < 1:531437/81‑1 (MQ=255) ggATTTACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAAt < 1:531438/81‑1 (MQ=255) tACTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACaa > 1:531456/1‑81 (MQ=255) cTGATGAATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACt > 2:531460/1‑81 (MQ=255) atgaATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTAt > 1:531459/1‑81 (MQ=255) tgaATTTATTGAAAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTAtc < 1:531439/81‑1 (MQ=255) | GGTATTAATTGATAACCAAACTGCAGTTTGCGTGACACCAGAGCAATTAACATTATTAGGATTTACTGATGAATTTATTG‑AAAAAA‑CTCAGCAAAACCTGATCGATGGTTGTTACCCTATCGAAAAAGAAAAACAAATTACAACTTATC > NC_000913/3187612‑3187760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |