| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,679,276 | +G | intergenic (‑89/‑143) | pdeH ← / → kdgK | c‑di‑GMP phosphodiesterase PdeH/2‑dehydro‑3‑deoxygluconokinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,679,272 | 1 | . | G | 97.3% | 124.4 / ‑3.3 | 37 | intergenic (‑85/‑147) | pdeH/kdgK | c‑di‑GMP phosphodiesterase PdeH/2‑dehydro‑3‑deoxygluconokinase |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (16/20); total (16/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATGTCCTGTGTTTAAAAGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCC‑GGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGCTCAAAAAAATAATGGAACACTGT > NC_000913/3679192‑3679346 | gATGTCCTGTGTTTAAAAGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGcc > 1:648817/1‑81 (MQ=255) tCCTGTGTTTAAAAGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCC‑ggg‑g < 1:648763/81‑1 (MQ=255) tCCTGTGTTTAAAAGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCC‑ggg‑g < 2:648761/81‑1 (MQ=255) ccTGTGTTTAAAAGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCC‑ggg‑gg > 1:648814/1‑80 (MQ=255) gtTTAAAAGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAAt > 2:648809/1‑81 (MQ=255) tttAAAAGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAAtt < 1:648764/81‑1 (MQ=255) tttAAAAGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAAtt < 1:648765/81‑1 (MQ=255) aaaGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCt < 2:648766/81‑1 (MQ=255) aaaGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCt > 2:648808/1‑81 (MQ=255) aaaGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCt > 1:648819/1‑81 (MQ=255) aaaGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCt < 1:648766/81‑1 (MQ=255) aGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCa > 2:648811/1‑81 (MQ=255) aTGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTcc < 2:648767/81‑1 (MQ=255) aTGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTc < 2:648768/80‑1 (MQ=255) ctgcCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCcaca < 1:648770/81‑1 (MQ=255) ccGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACgg < 2:648770/81‑1 (MQ=255) ggACTCGACAAAGATTATCGTCGCGTAAGGGCAGAACTTTACCGCCTGGCC‑GGGAGTAAATTTCCTCACTCCACAACGTaa < 2:648771/81‑1 (MQ=255) ggACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGaa > 1:648822/1‑81 (MQ=255) gACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAAt < 1:648774/81‑1 (MQ=255) gACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAAt < 1:648773/81‑1 (MQ=255) cTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCt > 2:648815/1‑81 (MQ=255) cTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCt < 2:648774/81‑1 (MQ=255) tCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCtt > 1:648821/1‑81 (MQ=255) gACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCttt > 1:648831/1‑80 (MQ=255) gACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTc < 2:648775/81‑1 (MQ=255) aaaGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAg > 2:648822/1‑80 (MQ=255) aaGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGa < 2:648776/81‑1 (MQ=255) cGGCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTc > 2:648796/1‑81 (MQ=255) ggCGCGTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCt < 1:648778/81‑1 (MQ=255) cgcgTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTgg > 2:648819/1‑81 (MQ=255) cgcgTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTgg > 2:648824/1‑81 (MQ=255) gcgTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGc < 1:648779/81‑1 (MQ=255) gcgTAAGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGc > 2:648826/1‑81 (MQ=255) aGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGCTCaaa < 1:648782/81‑1 (MQ=255) aGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGCTCaaa < 1:648780/81‑1 (MQ=255) aGGGCAGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGCTCaaa < 1:648781/81‑1 (MQ=255) aGAACTTTACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGCTCAAAAAaat < 2:648782/81‑1 (MQ=255) tttACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGCTCAAAAAAATAATg > 2:648817/1‑80 (MQ=255) ttACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGCTCAAAAAAATAATgg > 2:648829/1‑80 (MQ=255) ttACCGCCTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGCTCAAAAAAATAATgg > 2:648833/1‑80 (MQ=255) cTGGCCGGGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGCTCAAAAAAATAATGGAACACTGt < 1:648784/81‑1 (MQ=255) | GATGTCCTGTGTTTAAAAGTGATGCTGCCCGGACTCGACAAAGATTATCGGCGCGTAAGGGCAGAACTTTACCGCCTGGCC‑GGG‑GTAAATTTCCTCACTCCACAACGGAATCTTTCAGGAATACGTTCTGGCTCAAAAAAATAATGGAACACTGT > NC_000913/3679192‑3679346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |