| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,313,074 | (A)7→8 | intergenic (‑83/‑276) | alsR ← / → rpiB | DNA‑binding transcriptional repressor AlsR/allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,313,067 | 1 | . | A | 100.0% | 43.5 / NA | 13 | intergenic (‑76/‑283) | alsR/rpiB | DNA‑binding transcriptional repressor AlsR/allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (5/8); total (5/8) | |||||||||||
CTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑AAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTATTTCATTTAAT > NC_000913/4312987‑4313140 | cTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTcac < 1:816936/81‑1 (MQ=255)cTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTcac < 2:816934/81‑1 (MQ=255) atcaCGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aaa < 2:816936/81‑1 (MQ=255) atcaCGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aaa < 2:816938/81‑1 (MQ=255) atcaCGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aa < 1:816938/80‑1 (MQ=255) aCGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aaaaaa < 2:816939/81‑1 (MQ=255) ttCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aaaaaaaat < 2:816940/81‑3 (MQ=255) ttCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aaaaaaaaa < 2:816941/81‑3 (MQ=255) ctctTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑aaaaaaaata < 2:816942/80‑4 (MQ=255) attgaaGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGtt > 1:816970/1‑81 (MQ=255) ttgaaGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGttt < 1:816944/81‑1 (MQ=255) aGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGtttattt < 2:816944/81‑1 (MQ=255) aGCAAGAACAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGt < 1:816946/81‑1 (MQ=255) aCAGAAAAGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTaa < 1:816947/81‑1 (MQ=255) aaaaGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAAtt > 1:816981/1‑81 (MQ=255) aaGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAAtttt < 2:816947/81‑1 (MQ=255) aGATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTa > 1:816975/1‑81 (MQ=255) gATGCTGGCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTAt < 1:816949/81‑1 (MQ=255) gCGACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTATTTCAttt < 1:816950/81‑1 (MQ=255) gACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTATTTCATTTaa > 1:816974/1‑81 (MQ=255) gACTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTATTTCATTTaa > 2:816977/1‑81 (MQ=255) aCTTCACAAAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTATTTCATTTAAt < 1:816951/81‑1 (MQ=255) | CTCATCACGTTCTCTTGTCCTTGAATTGAAGACGCCACTATATCACCACAGCAAGAACAGAAAAGATGCTGGCGACTTCAC‑AAAAAAATAAAATTTATAAAGTTTATTTTATTGTGAACAATGGCGAGTGGCTTAAAATTTTATTTCATTTAAT > NC_000913/4312987‑4313140 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |