| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,351,047 | (T)7→8 | coding (616/1632 nt) | dcuS ← | sensory histidine kinase DcuS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,351,040 | 1 | . | T | 97.0% | 114.3 / ‑3.3 | 33 | coding (623/1632 nt) | dcuS | sensory histidine kinase DcuS |
| Reads supporting (aligned to +/- strand): ref base . (1/0); new base T (20/12); total (21/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCCTTCTTTGATAGACTGCAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGA‑TT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAAATAATACCGACCAGATAA > NC_000913/4350961‑4351115 | gCCTTCTTTGATAGACTGCAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGA‑t > 2:826618/1‑81 (MQ=255) ttcttTGATAGACTGCAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGA‑tt‑tt > 2:826629/1‑81 (MQ=255) tGATAGACTGCAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGA‑tt‑tttt < 2:826578/78‑1 (MQ=255) gATAGACTGCAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGA‑tt‑ttttttc < 2:826579/80‑3 (MQ=255) gATAGACTGCAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGA‑tt‑tttttt > 1:826610/1‑78 (MQ=255) aTAGACTGCAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGA‑tt‑ttttttcag < 1:826581/81‑5 (MQ=255) tAGACTGCAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGA‑tt‑ttttttcag > 1:826627/1‑76 (MQ=255) gCAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCtt > 2:826620/1‑80 (MQ=255) cAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTaa > 1:826617/1‑81 (MQ=255) cAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTa < 1:826583/80‑1 (MQ=255) aaCATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAAc > 2:826635/1‑81 (MQ=255) aaCATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAAc < 1:826584/81‑1 (MQ=255) cATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAAc > 2:826667/1‑79 (MQ=255) tGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGa < 2:826584/81‑1 (MQ=255) ttGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGc > 1:826628/1‑81 (MQ=255) cTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCa < 2:826585/80‑1 (MQ=255) cAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAAt > 2:826621/1‑80 (MQ=255) aaaCAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCa < 2:826586/81‑1 (MQ=255) aCAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGt < 2:826587/81‑1 (MQ=255) aGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTcc < 1:826589/81‑1 (MQ=255) cGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGa > 2:826632/1‑81 (MQ=255) gagaTTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAg > 1:826623/1‑81 (MQ=255) gagaTTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAg > 2:826658/1‑81 (MQ=255) gaTTTCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCa > 2:826648/1‑81 (MQ=255) tttCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATg > 1:826641/1‑81 (MQ=255) tCGTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGc < 2:826589/80‑1 (MQ=255) gTAGGGTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCa > 1:826632/1‑80 (MQ=255) gggTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAaat < 1:826591/80‑1 (MQ=255) ggTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAaataa < 1:826592/81‑1 (MQ=255) ggTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAaataa > 2:826634/1‑81 (MQ=255) ggTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAaataa > 2:826642/1‑81 (MQ=255) gTTCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAaataat < 1:826593/81‑1 (MQ=255) tCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAAATAATAc > 2:826646/1‑81 (MQ=255) tCCAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAAATAATAc > 1:826658/1‑81 (MQ=255) cAGGCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAAATAATACCg < 2:826593/81‑1 (MQ=255) ggCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAAATAATACCGAc > 1:826661/1‑81 (MQ=255) gCCGAAAAGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAAATAATACCGAc > 1:826642/1‑80 (MQ=255) gCCGAAAAGGA‑TTCTTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAAATAATACCGAc > 1:826631/1‑80 (MQ=255) aaaaGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAAATAATACCGACCAGa > 1:826640/1‑80 (MQ=255) aaGGATTT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAAATAATACCGACCAGATaa > 1:826638/1‑81 (MQ=255) | GCCTTCTTTGATAGACTGCAACATGGCCTGGCGTTGCTCAAACAGCGTGGAGATTTCGTAGGGTTCCAGGCCGAAAAGGA‑TT‑TTTTTCAGTACCTTAACCAGAATGCAGGTGCCAATCAGTCCGACCAGCATGCCAAATAATACCGACCAGATAA > NC_000913/4350961‑4351115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |