| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 21 (0.690) | 18/160 | 0.6 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2737118 = | 0 (0.000) | intergenic (+235/‑36) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 32 (1.050) | 25/160 | 0.3 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2737125 | 0 (0.000) | intergenic (+242/‑29) | bamD/raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor | |||||
GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1979191‑1979270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGTCAACGAATCT < NC_000913/2737125‑2737047 GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCG < 1:61457/81‑1GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCG < 1:61458/81‑1 ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCG > 1:61516/1‑80 ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCG > 1:61515/1‑80 CAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGT > 2:440302/1‑80 AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATAAACGTGA < 2:54558/81‑1 GATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATT > 1:440301/1‑80 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAG > 2:440300/1‑80 AAACAGAAGCCACTGGAGCACCCCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCAT < 2:4325/81‑1 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTT < 1:625067/81‑1 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTT < 1:625050/81‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTC > 2:440347/1‑81 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCT < 1:193754/81‑1 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTG < 1:4348/81‑1 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGAT > 1:440346/1‑81 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAA < 2:193751/81‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAA < 2:313755/81‑1 CCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAAT < 1:58773/81‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATG > 1:440345/1‑81 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGT < 1:54562/79‑1 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGA < 2:61420/81‑1 AAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGA < 1:54574/81‑1 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATG < 1:4337/81‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGA < 2:61417/81‑1 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGA > 1:440344/1‑80 AATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTT < 1:625049/81‑1 AATCAGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTT < 2:313771/80‑1 AGTAAGTTGGCAGCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTC < 1:313783/80‑1 GCATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGTCAAC > 1:440343/1‑81 CATCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGTCAACG < 2:58781/81‑1 TCACCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGTCAACGAA > 1:440342/1‑81 CCGTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGTCAACGAATCT > 2:440341/1‑81 GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1979191‑1979270‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGAATTCAGCATACCGTTCCTGATGTCAAAATGTGTGATGAAAATCTCATAATTTTGTCACTTTTTGTCAACGAATCT < NC_000913/2737125‑2737047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |