| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 919,229 | A→G | intergenic (‑109/‑6) | ybjX ← / → macA | DUF535 domain‑containing protein YbjX/ABC‑type tripartite efflux pump membrane fusion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 919,229 | 0 | A | G | 95.5% | 68.8 / NA | 22 | intergenic (‑109/‑6) | ybjX/macA | DUF535 domain‑containing protein YbjX/ABC‑type tripartite efflux pump membrane fusion protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (7/14); total (7/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTAACGTAAATTTTAGGGTTTTGTTGATATTTCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAAAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAGTCATCGCCGGACTGATTACG > NC_000913/919155‑919306 | cTAACGTAAATTTTAGGGTTTTGTTGATATTTCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAAttt < 2:172912/80‑1 (MQ=255) gTAAATTTTAGGGTTTTGTTGATATTTCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGaa > 1:172938/1‑80 (MQ=255) aTTTTAGGGTTTTGTTGATATTTCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGc < 1:172914/81‑1 (MQ=255) aTTTTAGGGTTTTGTTGATATTTCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGc < 1:172913/81‑1 (MQ=255) ggTTTTGTTGATATTTCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAAc < 2:172915/81‑1 (MQ=255) gATATTTCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAAAATTTATGAAAAAGCGGAAAACCGTgaaga < 2:172916/80‑1 (MQ=255) atatTTCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGaagaag < 2:172918/81‑1 (MQ=255) atatTTCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGaagaag < 2:172917/81‑1 (MQ=255) tCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGcgtt < 2:172919/80‑1 (MQ=255) gTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGcgttac < 2:172920/80‑1 (MQ=255) tGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGcgttacgt > 2:172940/1‑80 (MQ=255) tGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGcgttacgt > 1:172939/1‑80 (MQ=255) gAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATAAAAAAGCGGAAAACCGTGAAGAAGcgttacgtt < 1:172921/80‑1 (MQ=255) aaTGACCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTgcgc > 1:172954/1‑81 (MQ=255) aCCCGGATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAAGCGTGAAGAAGCGTTACGTTATTGCGCTTGt < 2:172922/81‑1 (MQ=255) ggATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGa > 2:172947/1‑79 (MQ=255) gATTGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAg > 1:172943/1‑81 (MQ=255) ttGGCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAGt > 1:172937/1‑80 (MQ=255) gCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAGTCAt < 1:172924/80‑1 (MQ=255) gCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAGTCATc < 2:172925/81‑1 (MQ=255) gCATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAGTCATc < 1:172923/81‑1 (MQ=255) cATATGGAGTATTCAGAGAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAGTCATCg < 1:172926/81‑1 (MQ=255) agagAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAGTCATCGCCGGACTGATTAc < 1:172927/80‑1 (MQ=255) agagAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAGTCATCGCCGGACTGATTACg > 1:172958/1‑81 (MQ=255) agagAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAGTCATCGCCGGACTGATTACg < 2:172928/81‑1 (MQ=255) | CTAACGTAAATTTTAGGGTTTTGTTGATATTTCGTTGAAGTTAATGACCCGGATTGGCATATGGAGTATTCAGAAAATTTATGAAAAAGCGGAAAACCGTGAAGAAGCGTTACGTTATTGCGCTGGTGATAGTCATCGCCGGACTGATTACG > NC_000913/919155‑919306 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |