| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 922,079 | T→G | L578R (CTG→CGG) | macB → | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 922,079 | 0 | T | G | 100.0% | 68.8 / NA | 21 | L578R (CTG→CGG) | macB | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (7/14); total (7/14) | |||||||||||
GCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACTGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTACCC > NC_000913/922002‑922155 | gcgGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGt > 1:173435/1‑81 (MQ=255) gggAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGttt > 2:173433/1‑81 (MQ=255) gAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGc < 2:173397/81‑1 (MQ=255) gCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTc < 2:173398/80‑1 (MQ=255) cATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCgg < 2:173399/81‑1 (MQ=255) cGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTgg < 1:173400/80‑1 (MQ=255) aTGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGcgcg > 2:173437/1‑81 (MQ=255) aGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGaa > 2:173431/1‑80 (MQ=255) ggTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATa < 2:173401/81‑1 (MQ=255) aGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAAcactgtc < 1:173403/81‑1 (MQ=255) aGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAAcactgtc < 2:173402/81‑1 (MQ=255) aGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAAcactgtcactg < 2:173404/81‑1 (MQ=255) gATGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGtt > 2:173445/1‑80 (MQ=255) aTGTTTTGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGTTaa < 2:173405/81‑1 (MQ=255) ttttGCAACAGTTCCTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGTTAAtt < 1:173406/80‑1 (MQ=255) cTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCa < 2:173407/80‑1 (MQ=255) cTGATCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAg < 1:173408/81‑1 (MQ=255) aTCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCt < 1:173409/80‑1 (MQ=255) tCGAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCttt > 1:173443/1‑81 (MQ=255) gAAGCCGTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTc > 1:173447/1‑81 (MQ=255) gTACGGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTAccc < 2:173410/81‑1 (MQ=255) | GCGGGAAATTGGCATTCGCATGGCTGTAGGTGCGCGAGCAAGCGATGTTTTGCAACAGTTCCTGATCGAAGCCGTACTGGTTTGCCTGGTCGGTGGCGCGTTGGGAATAACACTGTCACTGTTAATTGCTTTCACCTTGCAGCTTTTCTTACCC > NC_000913/922002‑922155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |