| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 949,466 | T→C | S35G (AGC→GGC) | ycaN ← | putative LysR‑type transcriptional regulator YcaN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 949,466 | 0 | T | C | 100.0% | 45.5 / NA | 14 | S35G (AGC→GGC) | ycaN | putative LysR‑type transcriptional regulator YcaN |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/7); total (7/7) | |||||||||||
CCGTTAACGATACGCTTCGGGTTGTCCGATTGAATAAGCGAATTTTAAGACGTTGTTCCAGTGTTTTAATACTATGGCTAATGGCGGACGAGGATAAGCCTAACTCATCGCCCGCTGCACGAAAGCTTTGATTACGGGCCACGGCAAAGA > NC_000913/949388‑949537 | ccGTTAACGATACGCTTCGGGTTGTCCGATTGAATAAGCGAATTTTAAGACGTTGTTCCAGTGTTTTAATACTATGGCCaa > 1:177945/1‑81 (MQ=255) gTTAACGATACGCTTCGGGTTGTCCGATTGAATAAGCGAATTTTAAGACGTTGTTCCAGTGTTTTAATACTATGGCCAATg > 1:177937/1‑81 (MQ=255) aaCGATACGCTTCGGGTTGTCCGATTGAATAAGCGAATTTTAAGACGTTGTTCCAGTGTTTTAATACTATGGCCAATGGCg > 2:177941/1‑81 (MQ=255) gATACGCTTCGGGTTGTCCGATTGAATAAGCGAATTTTAAGACGTTGTTCCAGTGTTTTAATACTATGGCCAATGGCGGAc > 1:177947/1‑81 (MQ=255) gTTGTCCGATTGAATAAGCGAATTTTAAGACGTTGTTCCAGTGTTTTAATACTATGGCCAATGGCGGACGAGGATAAGCCt < 2:177916/81‑1 (MQ=255) aTTGAATAAGCGAATTTTAAGACGTTGTTCCAGTGTTTTAATACTATGGCCAATGGCGGACGAGGATAAGCCTAACTCATc < 1:177917/81‑1 (MQ=255) aTTTTAAGACGTTGTTCCAGTGTTTTAATACTATGGCCAATGGCGGACGAGGATAAGCCTAACTCATCGCCCGCTGCACg > 2:177946/1‑80 (MQ=255) aGACGTTGTTCCAGTGTTTTAATACTATGGCCAATGGCGGACGAGGATAAGCCTAACTCATCGCCCGCTGCACGAAAGCtt < 1:177919/81‑1 (MQ=255) aGACGTTGTTCCAGTGTTTTAATACTATGGCCAATGGCGGACGAGGATAAGCCTAACTCATCGCCCGCTGCACGAAAGCt < 1:177918/80‑1 (MQ=255) tCCAGTGTTTTAATACTATGGCCAATGGCGGACGAGGATAAGCCTAACTCATCGCCCGCTGCACGAAAGCTTTGATTACgg > 1:177953/1‑81 (MQ=255) aGTGTTTTAATACTATGGCCAATGGCGGACGAGGATAAGCCTAACTCATCGCCCGCTGCACGAAAGCTTTGATTACGGGcc < 2:177920/81‑1 (MQ=255) tgtTTTAATACTATGGCCAATGGCGGACGAGGATAAGCCTAACTCATCGCCCGCTGCACGAAAGCTTTGATTACGGGCCAc < 1:177921/81‑1 (MQ=255) aTACTATGGCCAATGGCGGACGAGGATAAGCCTAACTCATCGCCCGCTGCACGAAAGCTTTGATTACGGGCCACGGCaaag < 1:177922/81‑1 (MQ=255) aCTATGGCCAATGGCGGACGAGGATAAGCCTAACTCATCGCCCGCTGCACGAAAGCTTTGATTACGGGCCACGGCaaaga > 1:177949/1‑80 (MQ=255) | CCGTTAACGATACGCTTCGGGTTGTCCGATTGAATAAGCGAATTTTAAGACGTTGTTCCAGTGTTTTAATACTATGGCTAATGGCGGACGAGGATAAGCCTAACTCATCGCCCGCTGCACGAAAGCTTTGATTACGGGCCACGGCAAAGA > NC_000913/949388‑949537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |