| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,091,005 | A→G | Y429H (TAT→CAT) | pgaA ← | partially deacetylated poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine outer membrane porin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,091,005 | 0 | A | G | 100.0% | 56.4 / NA | 17 | Y429H (TAT→CAT) | pgaA | partially deacetylated poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine outer membrane porin |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (11/6); total (11/6) | |||||||||||
GCACGAGGCCAACCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAA > NC_000913/1090932‑1091078 | gcACGAGGCCAACCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATgagcaagc > 1:199908/1‑81 (MQ=255) gAGGCCAACCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGctctc > 1:199906/1‑81 (MQ=255) cAACCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCt > 1:199915/1‑81 (MQ=255) aaCCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTg > 2:199921/1‑81 (MQ=255) aaCCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTg > 1:199916/1‑81 (MQ=255) gggCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCAttt < 1:199888/81‑1 (MQ=255) ggCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCATTTc < 1:199889/81‑1 (MQ=255) tAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCt < 1:199890/80‑1 (MQ=255) acacTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAgg > 1:199918/1‑80 (MQ=255) acacTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAgg > 2:199912/1‑80 (MQ=255) gcgTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGAt < 1:199891/79‑1 (MQ=255) aTGCGCAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTatat > 1:199917/1‑81 (MQ=255) cgcAGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATAtttt < 1:199892/81‑1 (MQ=255) aGTCCCTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGc > 2:199927/1‑80 (MQ=255) ccTGATTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACgg > 1:199928/1‑81 (MQ=255) aTTTCCTGGTGCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTg < 2:199893/80‑1 (MQ=255) gCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGaa > 1:199920/1‑81 (MQ=255) gCGTTATGAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGaa > 2:199924/1‑81 (MQ=255) | GCACGAGGCCAACCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAA > NC_000913/1090932‑1091078 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |