Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,115,538	G→A	intergenic (‑48/+124)	mdtG ← / ← lpxL	efflux pump MdtG/lauroyl acyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,115,538	0	G	A	100.0%	79.5 / NA	23	intergenic (‑48/+124)	mdtG/lpxL	efflux pump MdtG/lauroyl acyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (11/12);  total (11/12)

GGGGTGTCATTTTCACAGGGTGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTT  >  NC_000913/1115465‑1115614                                                                          |                                                                             ggggTGTCATTTTCACAGGGTGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGc                                                                        <  2:203161/80‑1 (MQ=255)   ggTGTCATTTTCACAGGGTGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGcaca                                                                     <  2:203162/81‑1 (MQ=255)     tgtCATTTTCACAGGGTGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACt                                                                   <  1:203163/81‑1 (MQ=255)       tCATTTTCACAGGGTGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTa                                                                  <  1:203164/80‑1 (MQ=255)              cacaGGGTGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATgcg                                                          >  1:203203/1‑81 (MQ=255)               acaGGGTGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATgcgc                                                         >  2:203195/1‑81 (MQ=255)                   ggTGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGa                                                     <  2:203165/81‑1 (MQ=255)                    gTGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGAc                                                    >  2:203185/1‑81 (MQ=255)                       aCATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACtt                                                  <  1:203166/80‑1 (MQ=255)                       aCATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTTc                                                 >  1:203200/1‑81 (MQ=255)                        cATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTTcc                                                <  1:203167/81‑1 (MQ=255)                         aTAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTTc                                                 >  1:203198/1‑79 (MQ=255)                             cAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTTCCAgggg                                           >  2:203196/1‑81 (MQ=255)                                   gCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCaa                                     >  1:203193/1‑81 (MQ=255)                                     tGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATc                                   >  2:203194/1‑81 (MQ=255)                                       ttGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCa                                 <  2:203168/81‑1 (MQ=255)                                           tGCGCCAGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCaga                               >  2:203197/1‑79 (MQ=255)                                                 aGGCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCtttt                       <  1:203169/81‑1 (MQ=255)                                                  ggCGCGGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTa                      <  2:203170/81‑1 (MQ=255)                                                     gcgGTGAACATAAGAAGAAAAAATAAGCACACTAATTATGCGCCCGACTGCCAGGGGGCGCAATCCAGAGAGCTTTTATCg                   <  2:203171/81‑1 (MQ=255)                                                                aagaagAAAAAATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAggg        >  1:203199/1‑81 (MQ=255)                                                                 agaagaAAAAATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAgggg       >  1:203192/1‑81 (MQ=255)                                                                  gaagaaAAAATAAGCACACGAATTATGCGCCCGACTTCCAGGGGGCGAAATCCAGAGAGCTTTTATCGCTAAATCAggggg      <  2:203172/81‑1 (MQ=255)                                                                      aaaaaaTAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGAttt  <  1:203173/81‑1 (MQ=255)                                                                          |                                                                             GGGGTGTCATTTTCACAGGGTGACATAGCAATCCGCTGTTGGTGCGCCAGGCGCGGTGAACATAAGAAGAAAAGATAAGCACACTAATTATGCGCCCGACTTCCAGGGGGCGCAATCCAGAGAGCTTTTATCGCTAAATCAGGGGGATTT  >  NC_000913/1115465‑1115614

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑