| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,181,196 | A→G | I24I (ATT→ATC) | ycfZ ← | putative inner membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,181,196 | 0 | A | G | 93.3% | 42.6 / NA | 15 | I24I (ATT→ATC) | ycfZ | putative inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (6/8); total (6/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCTTTATGCGCGATCTCTTCAGCATCTGGTACAGTACCGGTAACGTCCGTAAAAAGTGTCTTCATTATTGGAATTAATGGCTTGCTGGCTGCTGTCAGAGGCAGGAGTATCAGTAAACTGAGCAGTATAATGAATTTTTTCATGG > NC_000913/1181125‑1181269 | gCTTTATGCGCGATCTCTTCAGCATCTGGTACAGTACCGGTAACGTCCGTAAAAAGTGTCTTCATTATTGGGATTAATGGc < 2:213034/81‑1 (MQ=255) ctTCAGCATCTGGTACAGTACCGGTAACGTCCGTAAAAAGTGTCTTCATTATTGGGATTAATGGCTTGCTGGCTGCTGt > 2:213048/1‑79 (MQ=255) ttCAGCATCTGGTACAGTACCGGTAACGTCCGTAAAAAGTGTCTTCATTATTGGGATTAATGGCTTGCTGgctgct < 1:213035/76‑1 (MQ=255) ttCAGCATCTGGTACAGTACCGGTAACGTCCGTAAAAAGTGTCTTCATTATTGGGATTAATGGCTTGCTGGCTGCTGt < 2:213036/78‑1 (MQ=255) tCAGCATCTGGTACAGTACCGGTAACGTCCGTAAAAAGTGTCTTCATTATTGGGATTAATGGCTTGCTGGCTGCTGTCa > 1:213050/1‑79 (MQ=255) cAGCATCTGGTACAGTACCGGTAACGTCCGTAAAAAGTGTCTTCATTATTGGGATTAATGGCTTGCTGGCTGCTGTCa < 1:213037/78‑1 (MQ=255) aGCATCTGGTACAGTACCGGTAACGTCCGTAAAAAGTGTCTTCATTATTGGGATTAATGGCTTGCTGGCTGCTGTCAGAgg > 2:213051/1‑81 (MQ=255) ggTACAGTACCGGTAACGTCCGTAAAAAGTGTCTTCATTATTGGGATTAATGGCTTGCTGGCTGCTGTCAGAGGCAGGAg > 1:213052/1‑80 (MQ=255) cAGTACCGTTAACGTCCGTAAAAAGTGTCTTCATTATTGGGATTAATGGCTTGCTGGCTGCTGTCAGAGGCAGGAGTATc < 2:213038/80‑1 (MQ=255) ggTAACGTCCGTAAAAAGTGTCTTCATTATTGGGATTAATGGCTTGCTGGCTGCTGTCAGAGGCAGGAGTATCAGTAAACt < 2:213039/81‑1 (MQ=255) gTAAAAAGTGTCTTCATTATTGGAATTAATGGCTTGCTGTCTGCTGTCAGATGCAGGAGTATCAGTAAACTGAGCAGtata < 2:213040/81‑1 (MQ=255) aaaaaGTGTCTTCATTATTGGGATTAATGGCTTGCTGGCTGCTGTCAGAGGCAGGAGTATCAGTAAACTGAGCAGTATAAt > 1:213056/1‑81 (MQ=255) gtgtCTTCATTATTGAGATTAATGGCTTGCTGGCTGCTGTCAGAGGCAGGAGTATCAGTAAACTGAGCAGTATAATGAAtt < 2:213041/81‑1 (MQ=255) cATTATTGGGATTAATGGCTTGCTGGCTGCTGTCAGAGGCAGGAGTATCAGTAAACTGAGCAGTATAATGAAtttttt < 2:213042/78‑1 (MQ=255) ttattGGGATTAATGGCTTGCTGGCTGCTGTCAGAGGCAGGAGTATCAGTAAACTGAGCAGTATAATGAATTTTTTCATgg > 2:213055/1‑81 (MQ=255) | GCTTTATGCGCGATCTCTTCAGCATCTGGTACAGTACCGGTAACGTCCGTAAAAAGTGTCTTCATTATTGGAATTAATGGCTTGCTGGCTGCTGTCAGAGGCAGGAGTATCAGTAAACTGAGCAGTATAATGAATTTTTTCATGG > NC_000913/1181125‑1181269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |