| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,196,790 | A→T | intergenic (+417/+77) | icd → / ← ymfD | isocitrate dehydrogenase/e14 prophage; putative SAM‑dependent methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,196,790 | 0 | A | T | 100.0% | 65.8 / NA | 19 | intergenic (+417/+77) | icd/ymfD | isocitrate dehydrogenase/e14 prophage; putative SAM‑dependent methyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (11/8); total (11/8) | |||||||||||
CCCGGGACTCGCCAGGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCGT > NC_000913/1196717‑1196865 | cccGGGACTCGCCAGGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAgg > 1:215270/1‑81 (MQ=255) cGGGACTCGCCAGGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGcc > 1:215263/1‑81 (MQ=255) gggACTCGCCAGGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCcg > 2:215265/1‑81 (MQ=255) gCCAGGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAgcgc < 1:215242/81‑1 (MQ=255) ggggACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGcc > 2:215262/1‑81 (MQ=255) ggACAGCCAACAGGCATTGGGTGCAATCACCATAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGcccc < 2:215243/81‑1 (MQ=255) gACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGCCCCt > 1:215271/1‑81 (MQ=255) cAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCacataca > 1:215268/1‑81 (MQ=255) ggCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATc < 2:215244/81‑1 (MQ=255) cATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCtt < 2:215245/81‑1 (MQ=255) gCAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACt > 2:215266/1‑80 (MQ=255) cAATCACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACt > 1:215260/1‑79 (MQ=255) cACCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACt > 2:215267/1‑81 (MQ=255) aCCTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTg < 2:215246/81‑1 (MQ=255) cTTAGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGtt < 2:215247/81‑1 (MQ=255) aGCGTTCAGGTACATGCGGAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGttt < 2:215248/79‑1 (MQ=255) ggAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATc > 2:215269/1‑81 (MQ=255) gAATGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCg > 2:215274/1‑81 (MQ=255) aaTGTTAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCGt < 1:215249/81‑1 (MQ=255) | CCCGGGACTCGCCAGGGGACAGCCAACAGGCATTGGGTGCAATCACCTTAGCGTTCAGGTACATGCGGAATGTAAAAAAGGCCGCGAGCGCGGCCCCTTCACATACATCTTTAGTACTGAGACTGTTTAACCTAGGGAATTATTATCGT > NC_000913/1196717‑1196865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |