| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,219,687 | T→C | pseudogene (87/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,219,687 | 0 | T | C | 100.0% | 15.1 / NA | 6 | pseudogene (87/2648 nt) | ycgH | putative transporter component, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (3/3); total (3/3) | |||||||||||
CCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCG > NC_000913/1219618‑1219750 | ccccGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGTATAAt > 2:217902/1‑81 (MQ=255) gggTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGACTATAGTATAATTTcc > 2:217898/1‑81 (MQ=255) ggTAATGCATATGCAACACAATTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATc < 1:217885/81‑1 (MQ=255) aTGCATATGCAACACAATTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCaaa < 2:217886/80‑1 (MQ=255) gCATATGCAACACAATTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGa > 1:217905/1‑80 (MQ=255) acacAATTGTTGGATGACTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCg < 2:217887/81‑1 (MQ=255) | CCCCGGGTTTAGTTTGGGACTTATTGCTCTGGCGGTGGGTAATGCATATGCAACACAATTGTTGGATGATTATAGTATAATTTCCTATATGACTGATGAAGAATCGCCGATTGAAATCAAAGATAATAATCCG > NC_000913/1219618‑1219750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |