| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,220,871 | G→A | pseudogene (1271/2648 nt) | ycgH → | putative transporter component, N‑terminal fragment |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,220,871 | 0 | G | A | 100.0% | 69.9 / NA | 20 | pseudogene (1271/2648 nt) | ycgH | putative transporter component, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (10/10); total (10/10) | |||||||||||
GAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATGTCGGTAATAATGGTCAGCTTAATAT > NC_000913/1220797‑1220943 | gAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCaaa < 2:217994/80‑1 (MQ=255) aaGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTAcc > 2:218019/1‑80 (MQ=255) aGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTAccc > 1:218023/1‑80 (MQ=255) aTGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAg < 1:217995/81‑1 (MQ=255) aTGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAg > 1:218018/1‑81 (MQ=255) cTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGaaa < 1:217996/81‑1 (MQ=255) ccATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGt < 2:217997/81‑1 (MQ=255) cATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTa < 1:217998/81‑1 (MQ=255) aTCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTaa < 2:217999/81‑1 (MQ=255) gACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAgg > 1:218020/1‑81 (MQ=255) aCTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTaaa < 1:218000/77‑1 (MQ=255) aCTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAg < 1:218001/79‑1 (MQ=255) cAGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATg > 2:218032/1‑81 (MQ=255) aGACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATGt > 1:218022/1‑81 (MQ=255) gACAGTATTATCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATGTc < 1:218002/81‑1 (MQ=255) attatCAATCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATGTCGGtaa > 1:218021/1‑80 (MQ=255) aaTCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATGTCGGTAATAATGGt > 1:218031/1‑81 (MQ=255) aTCTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATGTCGGTAATAATGGt > 2:218026/1‑80 (MQ=255) cTTTCGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATGTCGGTAATAATGGTCAg > 2:218025/1‑81 (MQ=255) cGTATGATGATGATCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATGTCGGTAATAATGGTCAGCtt < 1:218003/80‑1 (MQ=255) tgatgatgaTCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATGTCGGTAATAATGGTCAGCTTAatat > 2:218024/1‑81 (MQ=255) | GAATATGAAAGATGACTCCGTTGTTACCCATCTGACTAATTCAGACAGTATTATCAATCTTTCGTATGATGATGGTCAAACATTTACCCAAGGAAAAACATTAACCGTAAAAGGTAATTATGTCGGTAATAATGGTCAGCTTAATAT > NC_000913/1220797‑1220943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |