| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,253,815 | C→T | G713D (GGC→GAC) | ycgV ← | putative autotransporter adhesin YcgV |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,253,815 | 0 | C | T | 100.0% | 65.5 / NA | 19 | G713D (GGC→GAC) | ycgV | putative autotransporter adhesin YcgV |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (7/12); total (7/12) | |||||||||||
CCGACATACAACGGCATTACATCAGAGAGACGTTTATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGCCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATAACTGCGCAACCAGATATTACCGTCTTTACTCTGA > NC_000913/1253740‑1253892 | ccGACATACAACGGCATTACATCAGAGAGACGTTTATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTc < 1:222454/81‑1 (MQ=255) aTACAACGGCATTACATCAGAGAGACGTTTATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTCAGttt < 2:222455/81‑1 (MQ=255) cAACGGCATTACATCAGAGAGACGTTTATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTCAGTTTGcc < 2:222456/81‑1 (MQ=255) gCATTACATCAGAGAGACGTTTATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTgg < 1:222457/81‑1 (MQ=255) aTTACATCAGAGAGACGTTTATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTGGc > 1:222489/1‑80 (MQ=255) aTTACATCAGAGAGACGTTTATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTGGCa < 2:222458/81‑1 (MQ=255) aTCAGAGAGACGTTTATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTGGCAAAg > 1:222490/1‑79 (MQ=255) agagaCGTTTATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCa < 2:222459/81‑1 (MQ=255) tttATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTcc < 1:222460/81‑1 (MQ=255) cccACCAAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCTAt > 2:222492/1‑80 (MQ=255) ccaccaAACTGGATACCGCTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATaa > 2:222506/1‑81 (MQ=255) ccGCTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATAACTGCGCAACCAGata < 2:222461/81‑1 (MQ=255) gCTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATAACTGCGCAACCAGatat > 2:222491/1‑80 (MQ=255) cTGTAACCCATGTCAAAGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATAACTGCGCAACCAGATATTa < 2:222462/81‑1 (MQ=255) tCAAAGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATAACTGCGCAACCAGATATTACCGTCTTTActc > 2:222496/1‑81 (MQ=255) tCAAAGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATAACTGCGCAACCAGATATTACCGTCTTTAct < 2:222463/80‑1 (MQ=255) aaaGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATAACTGCGCAACCAGATATTACCGTCTTTActct < 1:222465/80‑1 (MQ=255) aaaGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATAACTGCGCAACCAGATATTACCGTCTTTActct < 1:222464/80‑1 (MQ=255) aaGTCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATAACTGCGCAACCAGATATTACCGTCTTTACTCTGa > 1:222511/1‑81 (MQ=255) | CCGACATACAACGGCATTACATCAGAGAGACGTTTATCCCCACCAAACTGGATACCGCTGTAACCCATGTCAAAGCCGCTCAGTTTGCCACTGGCAAAGGAGTCCAGGCTTCCCCCATAACTGCGCAACCAGATATTACCGTCTTTACTCTGA > NC_000913/1253740‑1253892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |