| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,345,388 | A→G | L452S (TTG→TCG) | pdeR ← | cyclic di‑GMP phosphodiesterase PdeR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,345,388 | 0 | A | G | 100.0% | 56.6 / NA | 17 | L452S (TTG→TCG) | pdeR | cyclic di‑GMP phosphodiesterase PdeR |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (11/6); total (11/6) | |||||||||||
ACCCAACGGCCTAAAGGCACAATTAGCCCTGACTCTTCGGCGTAGGAAATGAAGTCCAACGGTGGAATCAACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTCGCCACGCCAGGTGATTTTCGGTTGA > NC_000913/1345319‑1345465 | aCCCAACGGCCTAAAGGCACAATTAGCCCTGACTCTTCGGCGTAGGAAACGAAGTCCAACGGTGGAATCGACCCACGtt > 2:234839/1‑79 (MQ=255) aaCGGCCTAAAGGCACAATTAGCCCTGACTCTTCGGCGTAGGAAATGAAGTCCAACGGTGGAATCGACCCACGTTCAGGt > 2:234832/1‑80 (MQ=255) cTAAAGGCACAATTAGCCCTGACTCTTCGGCGTAGGAAATGAAGTCCAACGGTGGAATCGACCCACGTTCAGGTGACTGc > 2:234837/1‑80 (MQ=255) gCACAATTAGCCCTGACTCTTCGGCGTAGGAAATGAAGTCCAACGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTa > 2:234842/1‑81 (MQ=255) cacaATTAGCCCTGACTCTTCGGCGTAGGAAATGAAGTCCAACGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTAc > 1:234840/1‑81 (MQ=255) gCCCTGACTCTTCGGCGTAGGAAATGAAGTCCAACGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCtt > 1:234841/1‑81 (MQ=255) ctTCGGCGTAGGAAATGAAGTCCAACGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTgc > 1:234825/1‑81 (MQ=255) cGTAGGAAATGAAGTCCAACGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACtt < 1:234813/81‑1 (MQ=255) gTAGGAAATGAAGTCCAACGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTc > 2:234852/1‑81 (MQ=255) aGGAAATGAAGTCCAACGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTcgc > 2:234853/1‑81 (MQ=255) tGAAGTCCAACGGTGGAATCGACCCACGTTCGGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTcgccacgcc < 2:234814/81‑1 (MQ=255) tGAAGTCCAACGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTcgccacgcc < 1:234815/81‑1 (MQ=255) gTCCAACGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTCGCCACGCCAGGt > 2:234843/1‑81 (MQ=255) aaCGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTCGCCACGCCAGGTGAtt < 1:234816/81‑1 (MQ=255) cGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTCGCCACGCCAGGTGAtttt < 1:234818/81‑1 (MQ=255) cGGTGGAATCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTCGCCACGCCAGGTGAtttt < 1:234817/81‑1 (MQ=255) aTCGACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTCGCCACGCCAGGTGATTTTCGGTTGa > 2:234854/1‑81 (MQ=255) | ACCCAACGGCCTAAAGGCACAATTAGCCCTGACTCTTCGGCGTAGGAAATGAAGTCCAACGGTGGAATCAACCCACGTTCAGGTGACTGCCAACGTACTAGTGCTTCCAGACTGCGCACTTCGCCACGCCAGGTGATTTTCGGTTGA > NC_000913/1345319‑1345465 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |