Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,384,010	C→T	intergenic (‑49/‑107)	ycjW ← / → ycjX	putative LacI‑type DNA‑binding transcriptional regulator YcjW/DUF463 domain‑containing protein YcjX

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,384,010	0	C	T	100.0%	61.7 / NA	18	intergenic (‑49/‑107)	ycjW/ycjX	putative LacI‑type DNA‑binding transcriptional regulator YcjW/DUF463 domain‑containing protein YcjX
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (12/6);  total (12/6)

GCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTAC  >  NC_000913/1383936‑1384074                                                                           |                                                                 gCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGt                                                            >  2:756785/1‑81 (MQ=255)  cAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTc                                                           >  2:240119/1‑81 (MQ=255)     tatCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGAt                                                        <  1:240092/81‑1 (MQ=255)         aTAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGac                                                     <  2:240093/80‑1 (MQ=255)                gtagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACggg                                             >  2:240122/1‑81 (MQ=255)                          tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATaa                                   >  1:240118/1‑81 (MQ=255)                           aGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAAt                                  >  1:240117/1‑81 (MQ=255)                                    aCTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAAtggcct                         >  1:240129/1‑81 (MQ=255)                                       ccgtccgAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAAtggcctggc                      >  1:240123/1‑81 (MQ=255)                                        cgtccgAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAAtggcctgg                       <  1:240094/79‑1 (MQ=255)                                            cgAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCca                 >  1:240126/1‑81 (MQ=255)                                             gAACGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCca                 >  2:240124/1‑80 (MQ=255)                                              aaCGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCcaca               >  2:240132/1‑81 (MQ=255)                                                cGTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACAtt             <  1:240095/81‑1 (MQ=255)                                                 gTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACAtt             >  2:240128/1‑80 (MQ=255)                                                 gTGAATGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTc            <  2:240096/81‑1 (MQ=255)                                                    aaTGCTGCACATCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCat          <  1:240097/80‑1 (MQ=255)                                                           cacaTCTTATGGAGTTTGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTAc  >  1:240121/1‑81 (MQ=255)                                                                           |                                                                 GCAATATCATAAATAGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCTTAC  >  NC_000913/1383936‑1384074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑